Vehicle Routing Problem with Time Windows. - Vladimir Vacic; Tarek M. Sobh (Int. J. Comput., 2004)

DisProt: a database of protein disorder. - Slobodan Vucetic; Zoran Obradovic; Vladimir Vacic; Predrag Radivojac; Kang Peng; Lilia M. Iakoucheva; Marc S. Cortese; J. David Lawson; Celeste J. Brown; Jason G. Sikes; Crystal D. Newton; A. Keith Dunker (Bioinform., 2005)

A Parsimony Approach to Genome-Wide Ortholog Assignment. - Zheng Fu; Xin Chen 037; Vladimir Vacic; Peng Nan; Yang Zhong; Tao Jiang 001 (RECOMB, 2006)

Two Sample Logo: a graphical representation of the differences between two sets of sequence alignments. - Vladimir Vacic; Lilia M. Iakoucheva; Predrag Radivojac (Bioinform., 2006)

Composition Profiler: a tool for discovery and visualization of amino acid composition differences. - Vladimir Vacic; Vladimir N. Uversky; A. Keith Dunker; Stefano Lonardi (BMC Bioinform., 2007)

MSOAR: A High-Throughput Ortholog Assignment System Based on Genome Rearrangement. - Zheng Fu; Xin Chen 037; Vladimir Vacic; Peng Nan; Yang Zhong; Tao Jiang 001 (J. Comput. Biol., 2007)

DisProt: the Database of Disordered Proteins. - Megan Sickmeier; Justin A. Hamilton; Tanguy LeGall; Vladimir Vacic; Marc S. Cortese; Ágnes Tantos; Beáta Szabó; Peter Tompa; Jake Yue Chen; Vladimir N. Uversky; Zoran Obradovic; A. Keith Dunker (Nucleic Acids Res., 2007)

A Probabilistic Model for Small RNA Flowgram Matching. - Vladimir Vacic; Hailing Jin; Jian-Kang Zhu; Stefano Lonardi (Pacific Symposium on Biocomputing, 2008)

Graphlet Kernels for Prediction of Functional Residues in Protein Structures. - Vladimir Vacic; Lilia M. Iakoucheva; Stefano Lonardi; Predrag Radivojac (J. Comput. Biol., 2010)

Disease-Associated Mutations Disrupt Functionally Important Regions of Intrinsic Protein Disorder. - Vladimir Vacic; Phineus R. L. Markwick; Christopher J. Oldfield; Xiaoyue Zhao; Chad Haynes; Vladimir N. Uversky; Lilia M. Iakoucheva (PLoS Comput. Biol., 2012)

Conpair: concordance and contamination estimator for matched tumor-normal pairs. - Ewa A. Bergmann; Bo-Juen Chen; Kanika Arora; Vladimir Vacic; Michael C. Zody (Bioinform., 2016)