Computational methodologies for modelling, analysis and simulation of signalling networks. - David R. Gilbert; Hendrik Fuß; Xu Gu; Richard J. Orton; Steve Robinson; Vladislav Vyshemirsky; Mary Jo Kurth; C. Stephen Downes; Werner Dubitzky (Briefings Bioinform., 2006)

Analysis of Signalling Pathways Using Continuous Time Markov Chains. - Muffy Calder; Vladislav Vyshemirsky; David R. Gilbert; Richard J. Orton (Trans. Comp. Sys. Biology, 2006)

Probabilistic reasoning and inference for systems biology. - Vladislav Vyshemirsky (2007)

Bayesian ranking of biochemical system models. - Vladislav Vyshemirsky; Mark A. Girolami (Bioinform., 2008)

BioBayes: A software package for Bayesian inference in systems biology. - Vladislav Vyshemirsky; Mark A. Girolami (Bioinform., 2008)

System Identification and Model Ranking: The Bayesian Perspective. - Mark Girolami; Ben Calderhead; Vladislav Vyshemirsky (Learning and Inference in Computational Systems Biology, 2010)

Modular model of TNFα cytotoxicity. - Roberto Chignola; Vladislav Vyshemirsky; Marcello Farina; Alessio Del Fabbro; Edoardo Milotti (Bioinform., 2011)

Computer-Aided Biophysical Modeling: A Quantitative Approach to Complex Biological Systems. - Edoardo Milotti; Vladislav Vyshemirsky; Michela Sega; Sabrina Stella; Federico Dogo; Roberto Chignola (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)