Tree-based search for stochastic simulation algorithm. - Vo Hong Thanh; Roberto Zunino (SAC, 2012)

Splitting for rare event simulation in biochemical systems. - Vo Hong Thanh; Roberto Zunino (SimuTools, 2013)

On Efficient Algorithms for Stochastic Simulation of Biochemical Reaction Systems. - Vo Hong Thanh (2013)

Adaptive tree-based search for stochastic simulation algorithm. - Vo Hong Thanh; Roberto Zunino (Int. J. Comput. Biol. Drug Des., 2014)

HRSSA - Efficient hybrid stochastic simulation for spatially homogeneous biochemical reaction networks. - Luca Marchetti; Corrado Priami; Vo Hong Thanh (J. Comput. Phys., 2016)

Efficient Constant-Time Complexity Algorithm for Stochastic Simulation of Large Reaction Networks. - Vo Hong Thanh; Roberto Zunino; Corrado Priami (IEEE ACM Trans. Comput. Biol. Bioinform., 2017)

Simulation Algorithms for Computational Systems Biology - Luca Marchetti; Corrado Priami; Vo Hong Thanh (Springer, 2017)

Efficient formulation of the rejection-based algorithm for biochemical reactions with delays. - Vo Hong Thanh; Roberto Zunino; Corrado Priami (Int. J. Bioinform. Res. Appl., 2019)

A comparison of deterministic and stochastic approaches for sensitivity analysis in computational systems biology. - Giulia Simoni; Vo Hong Thanh; Corrado Priami; Luca Marchetti (Briefings Bioinform., 2020)

RSSALib: a library for stochastic simulation of complex biochemical reactions. - Vo Hong Thanh (Bioinform., 2020)

Cotranscriptional Kinetic Folding of RNA Secondary Structures Including Pseudoknots. - Vo Hong Thanh; Dani Korpela; Pekka Orponen (J. Comput. Biol., 2021)

Beyond Time-Homogeneity for Continuous-Time Multistate Markov Models. - Emmett B. Kendall; Jonathan P. Williams; Gudmund Horn Hermansen; Frédéric Y. Bois; Vo Hong Thanh (J. Comput. Graph. Stat., 2025)