cswHMM: A Novel Context Switching Hidden Markov Model for Biological Sequence Analysis. - Vojtech Bystrý; Matej Lexa (BIOINFORMATICS, 2012)

ARResT/AssignSubsets: a novel application for robust subclassification of chronic lymphocytic leukemia based on B cell receptor IG stereotypy. - Vojtech Bystrý; Andreas Agathangelidis; Vasilis Bikos; Lesley Ann Sutton; Panagiotis Baliakas; Anastasia Hadzidimitriou; Kostas Stamatopoulos; Nikos Darzentas (Bioinform., 2015)

ARResT/Interrogate: an interactive immunoprofiler for IG/TR NGS data. - Vojtech Bystrý; Tomas Reigl; Adam Krejci; Martin Demko; Barbora Hanakova; Andrea Grioni; Henrik Knecht; Max Schlitt; Peter Dreger; Leopold Sellner; Dietrich Herrmann; Marine Pingeon; et al. (Bioinform., 2017)

GLASS: assisted and standardized assessment of gene variations from Sanger sequence trace data. - Karol Pal; Vojtech Bystrý; Tomas Reigl; Martin Demko; Adam Krejci; Tasoula Touloumenidou; Evangelia Stalika; Boris Tichy; Paolo Ghia; Kostas Stamatopoulos; Sarka Pospisilova; Jitka Malcikova; et al. (Bioinform., 2017)

ToTem: a tool for variant calling pipeline optimization. - Nikola Tom; Ondrej Tom; Jitka Malcikova; Sarka Pavlova; Blanka Kubesova; Tobias Rausch; Miroslav Kolarík; Vladimir Benes; Vojtech Bystrý; Sarka Pospisilova (BMC Bioinform., 2018)