Applications of Statistical Criteria in Protein Sequence Analysis: Case Study of Yeast RNA Polymerase II Subunits. - Volker Brendel; Samuel Karlin (Comput. Chem., 1994)

GeneGenerator- a flexible algorfthm for gene prediction. - Jürgen Kleffe; Klaus Hermann; Wolfgang Vahrson; Burghardt Wittig; Volker Brendel (German Conference on Bioinformatics, 1997)

GeneGenerator - a flexible algorithm for gene prediction and its application to maize sequences. - Jürgen Kleffe; Klaus Hermann; Wolfgang Vahrson; Burghardt Wittig; Volker Brendel (Bioinform., 1998)

Optimal spliced alignment of homologous cDNA to a genomic DNA template. - Jonathan Usuka; Wei Zhu 001; Volker Brendel (Bioinform., 2000)

Gene discovery using the maize genome database ZmDB. - Xiaowu Gai; Shailesh Lal; Liqun Xing; Volker Brendel; Virginia Walbot (Nucleic Acids Res., 2000)

Multi-query sequence BLAST output examination with MuSeqBox. - Liqun Xing; Volker Brendel (Bioinform., 2001)

Integration of Data Management and Analysis for Genome Research. - Volker Brendel (GI Jahrestagung (Ergänzungsband), 2002)

Gene structure identification with MyGV using cDNA evidence and protein homologs to improve ab initio predictions. - Wei Zhu 001; Volker Brendel (Bioinform., 2002)

ZmDB, an integrated database for maize genome research. - Qunfeng Dong; Laura Roy; Michael Freeling; Virginia Walbot; Volker Brendel (Nucleic Acids Res., 2003)

GeneSeqer add PlantGDB: gene structure prediction in plant genomes. - Shannon D. Schlueter; Qunfeng Dong; Volker Brendel (Nucleic Acids Res., 2003)

Space and time efficient parallel algorithms and software for EST clustering. - Anantharaman Kalyanaraman; Srinivas Aluru; Volker Brendel; Suresh C. Kothari (IEEE Trans. Parallel Distributed Syst., 2003)

Gene structure prediction from consensus spliced alignment of multiple ESTs matching the same genomic locus. - Volker Brendel; Liqun Xing; Wei Zhu 001 (Bioinform., 2004)

PlantGDB, plant genome database and analysis tools. - Qunfeng Dong; Shannon D. Schlueter; Volker Brendel (Nucleic Acids Res., 2004)

MaizeGDB, the community database for maize genetics and genomics. - Carolyn J. Lawrence; Qunfeng Dong; Mary L. Polacco; Trent E. Seigfried; Volker Brendel (Nucleic Acids Res., 2004)

SynBrowse: a synteny browser for comparative sequence analysis. - Xiaokang Pan; Lincoln Stein; Volker Brendel (Bioinform., 2005)

Incorporation of splice site probability models for non-canonical introns improves gene structure prediction in plants. - Michael E. Sparks; Volker Brendel (Bioinform., 2005)

Engineering a software tool for gene structure prediction in higher organisms. - Gordon Gremme; Volker Brendel; Michael E. Sparks; Stefan Kurtz (Inf. Softw. Technol., 2005)

Creating Bioinformatic Workflows within the BioExtract Server. - Carol Lushbough; Michael K. Bergman; Carolyn J. Lawrence; Douglas M. Jennewein; Volker Brendel (BIOCOMP, 2007)

Markov Model Variants for Appraisal of Coding Potential in Plant DNA. - Michael E. Sparks; Volker Brendel; Karin S. Dorman (ISBRA, 2007)

Tracembler - software for in-silico chromosome walking in unassembled genomes. - Qunfeng Dong; Matthew D. Wilkerson; Volker Brendel (BMC Bioinform., 2007)

An Overview of the BioExtract Server - a Distributed, Web Based Application for Bioinformatic Analysis. - Carol Lushbough; Volker Brendel (BIOCOMP, 2008)

TableMaker: An ad hoc Query Tool for Relational Databases. - Carol Lushbough; Jon Duvick; Qunfeng Dong; Douglas M. Jennewein; Joe Reynoldson; Volker Brendel (BIOCOMP, 2008)

Pairwise Statistical Significance Versus Database Statistical Significance for Local Alignment of Protein Sequences. - Ankit Agrawal 001; Volker Brendel; Xiaoqiu Huang 001 (ISBRA, 2008)

MetWAMer: eukaryotic translation initiation site prediction. - Michael E. Sparks; Volker Brendel (BMC Bioinform., 2008)

Pairwise statistical significance and empirical determination of effective gap opening penalties for protein local sequence alignment. - Ankit Agrawal 001; Volker Brendel; Xiaoqiu Huang 001 (Int. J. Comput. Biol. Drug Des., 2008)

Implementing bioinformatic workflows within the BioExtract Server. - Carol Lushbough; Michael K. Bergman; Carolyn J. Lawrence; Douglas M. Jennewein; Volker Brendel (Int. J. Comput. Biol. Drug Des., 2008)

PlantGDB: a resource for comparative plant genomics. - Jon Duvick; Ann Fu; Usha Muppirala; Mukul Sabharwal; Matthew D. Wilkerson; Carolyn J. Lawrence; Carol Lushbough; Volker Brendel (Nucleic Acids Res., 2008)

Common introns within orthologous genes: software and application to plants. - Matthew D. Wilkerson; Yuanbin Ru; Volker Brendel (Briefings Bioinform., 2009)

MaizeGDB becomes 'sequence-centric'. - Taner Z. Sen; Carson M. Andorf; Mary L. Schaeffer; Lisa C. Harper; Michael E. Sparks; Jon Duvick; Volker P. Brendel; Ethalinda K. S. Cannon; Darwin A. Campbell; Carolyn J. Lawrence (Database J. Biol. Databases Curation, 2009)

BioExtract Server - An Integrated Workflow-Enabling System to Access and Analyze Heterogeneous, Distributed Biomolecular Data. - Carol Lushbough; Michael K. Bergman; Carolyn J. Lawrence; Douglas M. Jennewein; Volker Brendel (IEEE ACM Trans. Comput. Biol. Bioinform., 2010)

The BioExtract Server: a web-based bioinformatic workflow platform. - Carol Lushbough; Douglas M. Jennewein; Volker Brendel (Nucleic Acids Res., 2011)

ParsEval: parallel comparison and analysis of gene structure annotations. - Daniel S. Standage; Volker P. Brendel (BMC Bioinform., 2012)

TAL Effector-Nucleotide Targeter (TALE-NT) 2.0: tools for TAL effector design and target prediction. - Erin L. Doyle; Nicholas J. Booher; Daniel S. Standage; Daniel F. Voytas; Volker P. Brendel; John K. VanDyk; Adam J. Bogdanove (Nucleic Acids Res., 2012)

SRAssembler: Selective Recursive local Assembly of homologous genomic regions. - Thomas W. McCarthy; Hsien-chao Chou; Volker P. Brendel (BMC Bioinform., 2019)