MOsDB: an integrated information resource for rice genomics. - Wojciech M. Karlowski; Heiko Schoof; Vijayalakshmi Janakiraman; Volker Stümpflen; Klaus F. X. Mayer (Nucleic Acids Res., 2003)

MIPS: analysis and annotation of proteins from whole genomes. - Hans-Werner Mewes; Clara Amid; Roland Arnold; Dmitrij Frishman; Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Philipp Pagel; Normann Strack; Volker Stümpflen; Jens Warfsmann; Andreas Ruepp (Nucleic Acids Res., 2004)

SIMAP - The similarity matrix of proteins. - Roland Arnold; Thomas Rattei; Patrick Tischler; Minh-Duc Truong; Volker Stümpflen; Hans-Werner Mewes (ECCB/JBI, 2005)

The MIPS mammalian protein?Cprotein interaction database. - Philipp Pagel; Stefan Kovac; Matthias Oesterheld; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Pekka Mark; Volker Stümpflen; Hans-Werner Mewes; Andreas Ruepp; Dmitrij Frishman (Bioinform., 2005)

From Biological Data to Biological Knowledge. - Volker Stümpflen; Richard Gregory 003; Karamfilka Nenova (TMRA, 2006)

The DIMA web resource - exploring the protein domain network. - Philipp Pagel; Matthias Oesterheld; Volker Stümpflen; Dmitrij Frishman (Bioinform., 2006)

FGDB: a comprehensive fungal genome resource on the plant pathogen Fusarium graminearum. - Ulrich Güldener; Gertrud Mannhaupt; Martin Münsterkötter; Dirk Haase; Matthias Oesterheld; Volker Stümpflen; Hans-Werner Mewes; Gerhard Adam (Nucleic Acids Res., 2006)

MPact: the MIPS protein interaction resource on yeast. - Ulrich Güldener; Martin Münsterkötter; Matthias Oesterheld; Philipp Pagel; Andreas Ruepp; Hans-Werner Mewes; Volker Stümpflen (Nucleic Acids Res., 2006)

MIPS: analysis and annotation of proteins from whole genomes in 2005. - Hans-Werner Mewes; Dmitrij Frishman; Klaus F. X. Mayer; Martin Münsterkötter; Octave Noubibou; Philipp Pagel; Thomas Rattei; Matthias Oesterheld; Andreas Ruepp; Volker Stümpflen (Nucleic Acids Res., 2006)

SIMAP: the similarity matrix of proteins. - Thomas Rattei; Roland Arnold; Patrick Tischler; Dominik Lindner; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2006)

The Mouse Functional Genome Database (MfunGD): functional annotation of proteins in the light of their cellular context. - Andreas Ruepp; Octave Noubibou Doudieu; Jos van den Oever; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Gisela Fobo; Goar Frishman; Corinna Montrone; Christine Skornia; Steffi Wanka; Thomas Rattei; Philipp Pagel; et al. (Nucleic Acids Res., 2006)

Large Scale Knowledge Representation of Distributed Biomedical Information. - Volker Stümpflen; Thorsten Barnickel; Karamfilka Nenova (TMRA, 2007)

Analysis of integrated biomolecular networks using a generic network analysis suite. - Matthias Oesterheld; Hans-Werner Mewes; Volker Stümpflen (J. Integr. Bioinform., 2007)

MIPS: analysis and annotation of genome information in 2007. - Hans-Werner Mewes; Sabine Dietmann; Dmitrij Frishman; Richard Gregory 003; Gertrud Mannhaupt; Klaus F. X. Mayer; Martin Münsterkötter; Andreas Ruepp; Manuel Spannagl; Volker Stümpflen; Thomas Rattei (Nucleic Acids Res., 2008)

DIMA 2.0 - predicted and known domain interactions. - Philipp Pagel; Matthias Oesterheld; Oksana Tovstukhina; Normann Strack; Volker Stümpflen; Dmitrij Frishman (Nucleic Acids Res., 2008)

SIMAP - structuring the network of protein similarities. - Thomas Rattei; Patrick Tischler; Roland Arnold; Franz Hamberger; Jörg Krebs; Jan Krumsiek; Benedikt Wachinger; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2008)

CORUM: the comprehensive resource of mammalian protein complexes. - Andreas Ruepp; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Michael Stransky; Brigitte Waegele; Thorsten Schmidt; Octave Noubibou Doudieu; Volker Stümpflen; Hans-Werner Mewes (Nucleic Acids Res., 2008)

Uncovering the Structure of Heterogenous Biological Data: Fuzzy Graph Partitioning in the k-partite Setting. - Florian Blöchl; Mara L. Hartsperger; Volker Stümpflen; Fabian J. Theis (GCB, 2010)

Structuring heterogeneous biological information using fuzzy clustering of k-partite graphs. - Mara L. Hartsperger; Florian Blöchl; Volker Stümpflen; Fabian J. Theis (BMC Bioinform., 2010)

The sufficient minimal set of miRNA seed types. - Daniel C. Ellwanger; Florian A. Büttner; Hans-Werner Mewes; Volker Stümpflen (Bioinform., 2011)

MIPS: curated databases and comprehensive secondary data resources in 2010. - Hans-Werner Mewes; Andreas Ruepp; Fabian J. Theis; Thomas Rattei; Mathias C. Walter; Dmitrij Frishman; Karsten Suhre; Manuel Spannagl; Klaus F. X. Mayer; Volker Stümpflen; Alexey V. Antonov (Nucleic Acids Res., 2011)