Dual multiple change-point model leads to more accurate recombination detection. - Vladimir N. Minin; Karin S. Dorman; Fang Fang; Marc A. Suchard (Bioinform., 2005)

Hot and Cold: Spatial Fluctuation in HIV-1 Recombination Rates. - Misha L. Rajaram; Vladimir N. Minin; Marc A. Suchard; Karin S. Dorman (BIBE, 2007)

cBrother: relaxing parental tree assumptions for Bayesian recombination detection. - Fang Fang; Jing Ding; Vladimir N. Minin; Marc A. Suchard; Karin S. Dorman (Bioinform., 2007)

A statistical approach to peptide identification from clustered tandem mass spectrometry data. - Soyoung Ryu; David R. Goodlett; William S. Noble; Vladimir N. Minin (BIBM Workshops, 2012)

Integrated Nested Laplace Approximation for Bayesian Nonparametric Phylodynamics. - Julia A. Palacios; Vladimir N. Minin (UAI, 2012)

A counting renaissance: combining stochastic mapping and empirical Bayes to quickly detect amino acid sites under positive selection. - Philippe Lemey; Vladimir N. Minin; Filip Bielejec; Sergei L. Kosakovsky Pond; Marc A. Suchard (Bioinform., 2012)

Phylogenetic Stochastic Mapping Without Matrix Exponentiation. - Jan Irvahn; Vladimir N. Minin (J. Comput. Biol., 2014)

Effcient Transition Probability Computation for Continuous-Time Branching Processes via Compressed Sensing. - Jason Xu; Vladimir N. Minin (UAI, 2015)

An efficient Bayesian inference framework for coalescent-based nonparametric phylodynamics. - Shiwei Lan; Julia A. Palacios; Michael D. Karcher; Vladimir N. Minin; Babak Shahbaba (Bioinform., 2015)

Quantifying and Mitigating the Effect of Preferential Sampling on Phylodynamic Inference. - Michael D. Karcher; Julia A. Palacios; Trevor Bedford; Marc A. Suchard; Vladimir N. Minin (PLoS Comput. Biol., 2016)

Calculating Higher-Order Moments of Phylogenetic Stochastic Mapping Summaries in Linear Time. - Amrit Dhar; Vladimir N. Minin (J. Comput. Biol., 2017)

Predicting B cell receptor substitution profiles using public repertoire data. - Amrit Dhar; Kristian Davidsen; Frederick A. Matsen IV; Vladimir N. Minin (PLoS Comput. Biol., 2018)

A Bayesian phylogenetic hidden Markov model for B cell receptor sequence analysis. - Amrit Dhar; Duncan K. Ralph; Vladimir N. Minin; Frederick A. Matsen IV (PLoS Comput. Biol., 2020)

Estimating effective population size changes from preferentially sampled genetic sequences. - Michael D. Karcher; Luiz Max Carvalho; Marc A. Suchard; Gytis Dudas; Vladimir N. Minin (PLoS Comput. Biol., 2020)

Locally adaptive Bayesian birth-death model successfully detects slow and rapid rate shifts. - Andrew F. Magee; Sebastian Höhna; Tetyana I. Vasylyeva; Adam D. Leaché; Vladimir N. Minin (PLoS Comput. Biol., 2020)

Using genetic data to identify transmission risk factors: Statistical assessment and application to tuberculosis transmission. - Isaac H. Goldstein; Damon Bayer; Ivan Barilar; Balladiah Kizito; Ogopotse Matsiri; Chawangwa Modongo; Nicola M. Zetola; Stefan Niemann; Volodymyr M. Minin; Sanghyuk S. Shin (PLoS Comput. Biol., 2022)