ICFF: A new method to incorporate implicit flexibility into an internal coordinate force field. - Vsevolod Katritch; Maxim Totrov; Ruben Abagyan (J. Comput. Chem., 2003)

Discovery of small molecule inhibitors of ubiquitin-like poxvirus proteinase I7L using homology modeling and covalent docking approaches. - Vsevolod Katritch; Chelsea M. Byrd; Vladimir Tseitin; Dongcheng Dai; Eugene Raush; Maxim Totrov; Ruben Abagyan; Robert Jordan; Dennis E. Hruby (J. Comput. Aided Mol. Des., 2007)

Identifying conformational changes of the beta2 adrenoceptor that enable accurate prediction of ligand/receptor interactions and screening for GPCR modulators. - Kimberly A. Reynolds; Vsevolod Katritch; Ruben Abagyan (J. Comput. Aided Mol. Des., 2009)

SimiCon: a web tool for protein-ligand model comparison through calculation of equivalent atomic contacts. - Manuel Rueda; Vsevolod Katritch; Eugene Raush; Ruben Abagyan (Bioinform., 2010)

Modeling ligand recognition at the P2Y12 receptor in light of X-ray structural information. - Silvia Paoletta; Davide Sabbadin; Ivar von Kügelgen; Sonja Hinz; Vsevolod Katritch; Kristina Hoffmann; Aliaa Abdelrahman; Jens Straßburger; Younis Baqi; Qiang Zhao; Raymond C. Stevens; Stefano Moro; et al. (J. Comput. Aided Mol. Des., 2015)