signac: A Python framework for data and workflow management. - Vyas Ramasubramani; Carl S. Adorf; Paul M. Dodd; Bradley D. Dice; Sharon C. Glotzer (SciPy, 2018)

rowan: A Python package for working with quaternions. - Vyas Ramasubramani; Sharon C. Glotzer (J. Open Source Softw., 2018)

Analyzing Particle Systems for Machine Learning and Data Visualization with freud. - Bradley D. Dice; Vyas Ramasubramani; Eric S. Harper; Matthew P. Spellings; Joshua A. Anderson; Sharon C. Glotzer (SciPy, 2019)

How to Professionally Develop Reusable Scientific Software - And When Not To. - Carl S. Adorf; Vyas Ramasubramani; Joshua A. Anderson; Sharon C. Glotzer (Comput. Sci. Eng., 2019)

HOOMD-blue version 3.0 A Modern, Extensible, Flexible, Object-Oriented API for Molecular Simulations. - Brandon L. Butler; Vyas Ramasubramani; Joshua A. Anderson; Sharon C. Glotzer (SciPy, 2020)

freud: A software suite for high throughput analysis of particle simulation data. - Vyas Ramasubramani; Bradley D. Dice; Eric S. Harper; Matthew P. Spellings; Joshua A. Anderson; Sharon C. Glotzer (Comput. Phys. Commun., 2020)

signac: Data Management and Workflows for Computational Researchers. - Bradley D. Dice; Brandon L. Butler; Vyas Ramasubramani; Alyssa Travitz; Michael M. Henry; Hardik Ojha; Kelly L. Wang; Carl S. Adorf; Eric Jankowski; Sharon C. Glotzer (SciPy, 2021)

coxeter: A Python package for working with shapes. - Vyas Ramasubramani; Bradley D. Dice; Tobias Dwyer; Sharon C. Glotzer (J. Open Source Softw., 2021)