Defining an Open Metadata Framework for Proteomics: The PROMIS Project. - W. John MacMullen; Mary C. Parmelee; David A. Fenstermacher; Bradley M. Hemminger (AMIA, 2002)

The ambiguous bioinformatics domain: A conceptual map of information science applications for molecular biology. - Sheila O. Denn; W. John MacMullen (ASIST, 2002)

Toward the Development of an Open Metadata Framework for Compositional Proteomics. - W. John MacMullen; David A. Fenstermacher (JCIS, 2002)

PROMIS: An XML-based metadata framework for proteomics. - W. John MacMullen (ASIST, 2003)

Inter-database annotation linkages in model organism databases. - W. John MacMullen (ASIST, 2005)

Information problems in molecular biology and bioinformatics. - W. John MacMullen; Sheila O. Denn (J. Assoc. Inf. Sci. Technol., 2005)

Managing scientific data for long-term access and use. - Melissa H. Cragin; W. John MacMullen; Jillian C. Wallis; Ann Zimmerman; Anna Keller Gold (ASIST, 2006)

Quantifying literature citations, index terms, and Gene Ontology annotations in the Saccharomyces Genome Database to assess results-set clustering utility. - W. John MacMullen (ASIST, 2006)

Facets and measures of gene ontology annotation quality in model organism databases. - W. John MacMullen (ASIST, 2006)

The effects of context on data quality in biomedical data reuse. - Leonard D'Avolio; Melissa H. Cragin; W. John MacMullen; Catherine Arnott-Smith (ASIST, 2007)

Searching for uses and users in Gene Ontology research. - W. John MacMullen (ASIST, 2008)

Evolving curricula in LIS-focused bioinformatics programs. - Joan C. Bartlett; Bradley M. Hemminger; Julia Kampov-Polevoi; W. John MacMullen; Gerald Benoît (ASIST, 2009)

Characteristics of bioinformatics employment advertisements. - Jennifer I. Hill; W. John MacMullen; Carole L. Palmer (ASIST, 2009)