HyLiTE: accurate and flexible analysis of gene expression in hybrid and allopolyploid species. - Wandrille Duchemin; Pierre-Yves Dupont; Matthew A. Campbell; Austen Ganley; Murray P. Cox (BMC Bioinform., 2015)

Digital and Handcrafting Processes Applied to Sound-Studies of Archaeological Bone Flutes. - Etienne Safa; Jean-Baptiste Barreau; Ronan Gaugne; Wandrille Duchemin; Jean-Daniel Talma; Bruno Arnaldi; Georges Dumont; Valérie Gouranton (EuroMed (1), 2016)

RecPhyloXML: a format for reconciled gene trees. - Wandrille Duchemin; Guillaume Gence; Anne-Muriel Arigon Chifolleau; Lars Arvestad; Mukul S. Bansal; Vincent Berry; Bastien Boussau; François Chevenet; Nicolas Comte; Adrián A. Davín; Christophe Dessimoz; David Dylus; et al. (Bioinform., 2018)

Phylogenetic signal from rearrangements in 18 Anopheles species by joint scaffolding extant and ancestral genomes. - Yoann Anselmetti; Wandrille Duchemin; Eric Tannier; Cédric Chauve; Sèverine Bérard (BMC Genom., 2018)