dbPPT: a comprehensive database of protein phosphorylation in plants. - Han Cheng; Wankun Deng; Yongbo Wang; Jian Ren 002; Zexian Liu; Yu Xue 001 (Database J. Biol. Databases Curation, 2014)

Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins. - Wankun Deng; Yongbo Wang; Lili Ma; Ying Zhang 052; Shahid Ullah; Yu Xue 001 (Briefings Bioinform., 2017)

CGDB: a database of circadian genes in eukaryotes. - Shujing Li; Ke Shui; Ying Zhang 052; Yongqiang Lv; Wankun Deng; Shahid Ullah; Luoying Zhang; Yu Xue 001 (Nucleic Acids Res., 2017)

WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes. - Yang Xu; Shuang Zhang; Shaofeng Lin; Yaping Guo; Wankun Deng; Ying Zhang 052; Yu Xue 001 (Nucleic Acids Res., 2017)

PTMD: A Database of Human Disease-associated Post-translational Modifications. - Hao-Dong Xu; Yongbo Wang; Shaofeng Lin; Wankun Deng; Di Peng; Qinghua Cui; Yu Xue 001 (Genom. Proteom. Bioinform., 2018)

iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations. - Jiaqi Zhou 003; Yang Xu; Shaofeng Lin; Yaping Guo; Wankun Deng; Ying Zhang 052; Anyuan Guo; Yu Xue 001 (Nucleic Acids Res., 2018)

iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. - Yaping Guo; Di Peng; Jiaqi Zhou 003; Shaofeng Lin; Chenwei Wang; Wanshan Ning; Hao-Dong Xu; Wankun Deng; Yu Xue 001 (Nucleic Acids Res., 2019)

HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction. - Wanshan Ning; Hao-Dong Xu; Peiran Jiang; Han Cheng; Wankun Deng; Yaping Guo; Yu Xue 001 (Genom. Proteom. Bioinform., 2020)

GPS 5.0: An Update on the Prediction of Kinase-specific Phosphorylation Sites in Proteins. - Chenwei Wang; Hao-Dong Xu; Shaofeng Lin; Wankun Deng; Jiaqi Zhou 003; Ying Zhang 052; Ying Shi; Di Peng; Yu Xue 001 (Genom. Proteom. Bioinform., 2020)