iEKPD 2.0: an update with rich annotations for eukaryotic protein kinases, protein phosphatases and proteins containing phosphoprotein-binding domains. - Yaping Guo; Di Peng; Jiaqi Zhou 003; Shaofeng Lin; Chenwei Wang; Wanshan Ning; Hao-Dong Xu; Wankun Deng; Yu Xue 001 (Nucleic Acids Res., 2019)

HybridSucc: A Hybrid-learning Architecture for General and Species-specific Succinylation Site Prediction. - Wanshan Ning; Hao-Dong Xu; Peiran Jiang; Han Cheng; Wankun Deng; Yaping Guo; Yu Xue 001 (Genom. Proteom. Bioinform., 2020)

DrLLPS: a data resource of liquid?liquid phase separation in eukaryotes. - Wanshan Ning; Yaping Guo; Shaofeng Lin; Bin Mei; Yu Wu; Peiran Jiang; Xiaodan Tan; Weizhi Zhang 002; Guowei Chen; Di Peng; Liang Chu (Nucleic Acids Res., 2020)

GPS-Palm: a deep learning-based graphic presentation system for the prediction of S-palmitoylation sites in proteins. - Wanshan Ning; Peiran Jiang; Yaping Guo; Chenwei Wang; Xiaodan Tan; Weizhi Zhang 002; Di Peng; Yu Xue 001 (Briefings Bioinform., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

GPS-Uber: a hybrid-learning framework for prediction of general and E3-specific lysine ubiquitination sites. - Chenwei Wang; Xiaodan Tan; Dachao Tang; Yujie Gou; Cheng Han; Wanshan Ning; Shaofeng Lin; Weizhi Zhang 002; Miaomiao Chen; Di Peng; Yu Xue 001 (Briefings Bioinform., 2022)

HemI 2.0: an online service for heatmap illustration. - Wanshan Ning; Yuxiang Wei 005; Letian Gao; Cheng Han; Yujie Gou; Shanshan Fu; Dan Liu; Chi Zhang; Xinhe Huang; Sicheng Wu; Di Peng; Chenwei Wang; et al. (Nucleic Acids Res., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

CPLM 4.0: an updated database with rich annotations for protein lysine modifications. - Weizhi Zhang 002; Xiaodan Tan; Shaofeng Lin; Yujie Gou; Cheng Han; Chi Zhang; Wanshan Ning; Chenwei Wang; Yu Xue 001 (Nucleic Acids Res., 2022)

GPS 6.0: an updated server for prediction of kinase-specific phosphorylation sites in proteins. - Miaomiao Chen; Weizhi Zhang 002; Yujie Gou; Danyang Xu; Yuxiang Wei 005; Dan Liu; Cheng Han; Xinhe Huang; Chengzhi Li; Wanshan Ning; Di Peng; Yu Xue 001 (Nucleic Acids Res., 2023)

HybridKla: a hybrid deep learning framework for lactylation site prediction. - Wanshan Ning; Feibo Qin; Ziwei Zhou; Hang Yang; Chentan Li; Yaping Guo (Briefings Bioinform., 2025)