An assessment of cancer clinical trials vocabulary and IT infrastructure in the U.S. - K. Gwaltney; Christopher G. Chute; Douglas Hageman; Warren A. Kibbe; Kathleen A. McCormick; Dianne M. Reeves; Lawrence W. Wright (AMIA, 2001)

dictyBase: a new Dictyostelium discoideum genome database. - Lisa Kreppel; Petra Fey; Pascale Gaudet; Eric M. Just; Warren A. Kibbe; Rex L. Chisholm; Alan R. Kimmel (Nucleic Acids Res., 2004)

Improved peak detection in mass spectrum by incorporating continuous wavelet transform-based pattern matching. - Pan Du 004; Warren A. Kibbe; Simon M. Lin (Bioinform., 2006)

dictyBase, the model organism database for Dictyostelium discoideum. - Rex L. Chisholm; Pascale Gaudet; Eric M. Just; Karen E. Pilcher; Petra Fey; Sohel N. Merchant; Warren A. Kibbe (Nucleic Acids Res., 2006)

Application of Wavelet Transform to the MS-based Proteomics Data Preprocessing. - Pan Du 004; Simon M. Lin; Warren A. Kibbe; Haihui Wang (BIBE, 2007)

Xanthusbase: adapting wikipedia principles to a model organism database. - Bradley I. Arshinoff; Garret Suen; Eric M. Just; Sohel M. Merchant; Warren A. Kibbe; Rex L. Chisholm; Roy D. Welch (Nucleic Acids Res., 2007)

OligoCalc: an online oligonucleotide properties calculator. - Warren A. Kibbe (Nucleic Acids Res., 2007)

lumi: a pipeline for processing Illumina microarray. - Pan Du 004; Warren A. Kibbe; Simon M. Lin (Bioinform., 2008)

A divide-and-conquer strategy to solve the out-of-memory problem of processing thousands of Affymetrix microarrays. - Chia-Ju Lee; Dong Fu; Pan Du 004; Hongmei Jiang; Simon M. Lin; Warren A. Kibbe (Int. J. Comput. Biol. Drug Des., 2008)

From disease ontology to disease-ontology lite: statistical methods to adapt a general-purpose ontology for the test of gene-ontology associations. - Pan Du 004; Gang Feng; Jared Flatow; Jie Song; Michelle Holko; Warren A. Kibbe; Simon M. Lin (Bioinform., 2009)

dictyBase - a Dictyostelium bioinformatics resource update. - Petra Fey; Pascale Gaudet; Tomaz Curk; Blaz Zupan; Eric M. Just; Siddhartha Basu; Sohel N. Merchant; Yulia A. Bushmanova; Gad Shaulsky; Warren A. Kibbe; Rex L. Chisholm (Nucleic Acids Res., 2009)

Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. - Pan Du 004; Xiao Zhang; Chiang-Ching Huang; Nadereh Jafari; Warren A. Kibbe; Lifang Hou; Simon M. Lin (BMC Bioinform., 2010)

Direct2Experts: a pilot national network to demonstrate interoperability among research-networking platforms. - Griffin M. Weber; William K. Barnett; Mike Conlon; David Eichmann; Warren A. Kibbe; Holly J. Falk-Krzesinski; Michael Halaas; Layne Johnson; Eric Meeks; Donald Mitchell; Titus Schleyer; Sarah C. Stallings; et al. (J. Am. Medical Informatics Assoc., 2011)

dictyBase update 2011: web 2.0 functionality and the initial steps towards a genome portal for the Amoebozoa. - Pascale Gaudet; Petra Fey; Siddhartha Basu; Yulia A. Bushmanova; Robert J. Dodson; Kerry A. Sheppard; Eric M. Just; Warren A. Kibbe; Rex L. Chisholm (Nucleic Acids Res., 2011)

GI Diaries©: A model iOS application for the collection of patient reported outcomes in clinical care. - Andrew Gawron; Mark Wimbiscus Yoon; Laura Wimbiscus Yoon; Kristina Verkaik; Meghan Thompson; Abel N. Kho; Warren A. Kibbe; John E. Pandolfino (AMIA, 2012)

Integrating Research Recruitment into a Clinical Patient Portal. - Luke V. Rasmussen; David Were; Jeff Lunt; Steve Lee; Carl Christensen; Warren A. Kibbe; Justin Starren (AMIA, 2012)

Text data extraction for a prospective, research-focused data mart: implementation and validation. - Monique Hinchcliff; Eric M. Just; Sofia Podlusky; John Varga; Rowland W. Chang; Warren A. Kibbe (BMC Medical Informatics Decis. Mak., 2012)

Disease Ontology: a backbone for disease semantic integration. - Lynn M. Schriml; Cesar Arze; Suvarna Nadendla; Yu-Wei Wayne Chang; Mark Mazaitis; Victor Felix; Gang Feng; Warren A. Kibbe (Nucleic Acids Res., 2012)

dictyBase 2013: integrating multiple Dictyostelid species. - Siddhartha Basu; Petra Fey; Yogesh Pandit; Robert J. Dodson; Warren A. Kibbe; Rex L. Chisholm (Nucleic Acids Res., 2013)

The disease and gene annotations (DGA): an annotation resource for human disease. - Kai Peng 001; Wei Xu 038; Jianyong Zheng; Kegui Huang; Huisong Wang; Jiansong Tong; Zhifeng Lin; Jun Liu; Wenqing Cheng; Dong Fu; Pan Du 004; Warren A. Kibbe; et al. (Nucleic Acids Res., 2013)

Generating a focused view of disease ontology cancer terms for pan-cancer data integration and analysis. - Tsung-Jung Wu; Lynn M. Schriml; Qingrong Chen; Maureen Colbert; Daniel J. Crichton; Richard P. Finney; Ying Hu; Warren A. Kibbe; Heather Kincaid; Daoud M. Meerzaman; Elvira Mitraka; Yang Pan; et al. (Database J. Biol. Databases Curation, 2015)

Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data. - Warren A. Kibbe; Cesar Arze; Victor Felix; Elvira Mitraka; Evan Bolton; Gang Fu; Christopher J. Mungall; Janos X. Binder; James Malone; Drashtti Vasant; Helen E. Parkinson; Lynn M. Schriml (Nucleic Acids Res., 2015)

The National Cancer Institute (NCI) Informatics Technology for Cancer Research Program (ITCR). - Juli D. Klemm; Mervi Heiskanen; Jerry Li; David Miller; Christos Patriotis; George Redmond; Miguel Ossandon; Jacek Capala; Leah E. Mechanic; Yantian Zhang; Rao Divi; Tony Dickherber; et al. (CRI, 2017)

Investigating sources of inaccuracy in wearable optical heart rate sensors. - Brinnae Bent; Benjamin Goldstein; Warren A. Kibbe; Jessilyn Dunn (npj Digit. Medicine, 2020)

The National COVID Cohort Collaborative (N3C): Rationale, design, infrastructure, and deployment. - Melissa A. Haendel; Christopher G. Chute; Tellen D. Bennett; David A. Eichmann; Justin Guinney; Warren A. Kibbe; Philip R. O. Payne; Emily R. Pfaff; Peter N. Robinson; Joel H. Saltz; Heidi Spratt; Christine Suver; et al. (J. Am. Medical Informatics Assoc., 2021)

Reply: Matters Arising 'Investigating sources of inaccuracy in wearable optical heart rate sensors'. - Brinnae Bent; Oana M. Enache; Benjamin Goldstein; Warren A. Kibbe; Jessilyn Dunn (npj Digit. Medicine, 2021)

Standardizing, harmonizing, and protecting data collection to broaden the impact of COVID-19 research: the rapid acceleration of diagnostics-underserved populations (RADx-UP) initiative. - Gabriel A. Carrillo; Michael Cohen-Wolkowiez; Emily M. D'agostino; Keith Marsolo; Lisa M. Wruck; Laura Johnson; James Topping; Al Richmond; Giselle Corbie; Warren A. Kibbe (J. Am. Medical Informatics Assoc., 2022)

Demonstrating an approach for evaluating synthetic geospatial and temporal epidemiologic data utility: results from analyzing >1.8 million SARS-CoV-2 tests in the United States National COVID Cohort Collaborative (N3C). - Jason A. Thomas; Randi E. Foraker; Noa Zamstein; Jon D. Morrow; Philip R. O. Payne; Adam B. Wilcox; Melissa A. Haendel; Christopher G. Chute; Kenneth R. Gersing; Anita Walden; Tellen D. Bennett; David A. Eichmann; et al. (J. Am. Medical Informatics Assoc., 2022)

National COVID Cohort Collaborative data enhancements: a path for expanding common data models. - Kellie M. Walters; Marshall Clark; Sofia Dard; Stephanie S. Hong; Elizabeth Kelly; Kristin Kostka; Adam M. Lee; Robert T. Miller; Michele Morris; Matvey B. Palchuk; Emily R. Pfaff; Adam B. Wilcox; et al. (J. Am. Medical Informatics Assoc., 2025)