QGB: Combined Use of Sequence Similarity and Codon Bias for Coding Region Identification. - David J. States; Warren Gish (J. Comput. Biol., 1994)

UTR Reconstruction and Analysis Using Genomically Aligned EST Sequences. - Zhengyan Kan; Warren Gish; Eric C. Rouchka; Jarret Glasscock; David J. States (ISMB, 2000)

MaskerAid : a performance enhancement to RepeatMasker. - Joseph A. Bedell; Ian Korf; Warren Gish (Bioinform., 2000)

MPBLAST : improved BLAST performance with multiplexed queries. - Ian Korf; Warren Gish (Bioinform., 2000)

WU-Blast2 server at the European Bioinformatics Institute. - Rodrigo Lopez; Ville Silventoinen; Stephen Robinson; Asif Kibria; Warren Gish (Nucleic Acids Res., 2003)

Improved spliced alignment from an information theoretic approach. - Miao Zhang; Warren Gish (Bioinform., 2006)