Phasing for medical sequencing using rare variants and large haplotype reference panels. - Kevin Sharp; Warren Kretzschmar; Olivier Delaneau; Jonathan Marchini (Bioinform., 2016)

ClusTrast: a short read de novo transcript isoform assembler guided by clustered contigs. - Karl Johan Westrin; Warren Kretzschmar; Olof Emanuelsson (BMC Bioinform., 2024)