KEGG: Kyoto Encyclopedia of Genes and Genomes. - Hiroyuki Ogata; Susumu Goto; Kazushige Sato; Wataru Fujibuchi; Hidemasa Bono; Minoru Kanehisa (Nucleic Acids Res., 1999)

NCBI GEO: mining millions of expression profiles - database and tools. - Tanya Barrett; Tugba O. Suzek; Dennis B. Troup; Stephen E. Wilhite; Wing-Chi Ngau; Pierre Ledoux; Dmitry Rudnev; Alex E. Lash; Wataru Fujibuchi; Ron Edgar (Nucleic Acids Res., 2005)

Network-based de-noising improves prediction from microarray data. - Tsuyoshi Kato; Yukio Murata; Koh Miura; Kiyoshi Asai; Paul Horton; Koji Tsuda; Wataru Fujibuchi (BMC Bioinform., 2006)

Comparative Genomic Analysis of Transcription Regulation Elements Involved in Human Map Kinase G-protein Coupling Pathway. - Natalia Polouliakh; Tohru Natsume; Hajime Harada; Wataru Fujibuchi; Paul Horton (J. Bioinform. Comput. Biol., 2006)

Exhaustive Search of Maximal Biclusters in Gene Expression Data. - Yoshifumi Okada; Wataru Fujibuchi; Paul Horton (IMECS, 2007)

CellMontage: similar expression profile search server. - Wataru Fujibuchi; Larisa Kiseleva; Takeaki Taniguchi; Hajime Harada; Paul Horton (Bioinform., 2007)

Classification of heterogeneous microarray data by maximum entropy kernel. - Wataru Fujibuchi; Tsuyoshi Kato (BMC Bioinform., 2007)

An upper bound on the hardness of exact matrix based motif discovery. - Paul Horton; Wataru Fujibuchi (J. Discrete Algorithms, 2007)

In search of true reads: A classification approach to next generation sequencing data selection. - Edward Wijaya; Jean-François Pessiot; Martin C. Frith; Wataru Fujibuchi; Kiyoshi Asai; Paul Horton (BIBM Workshops, 2010)

CELLPEDIA: a repository for human cell information for cell studies and differentiation analyses. - Akiko Hatano; Hirokazu Chiba; Harry Amri Moesa; Takeaki Taniguchi; Satoshi Nagaie; Koji Yamanegi; Takako Takai-Igarashi; Hiroshi Tanaka; Wataru Fujibuchi (Database J. Biol. Databases Curation, 2011)

Pairwise ranking component analysis. - Jean-François Pessiot; Hyeryung Kim; Wataru Fujibuchi (Knowl. Inf. Syst., 2013)

eSPRESSO: topological clustering of single-cell transcriptomics data to reveal informative genes for spatio-temporal architectures of cells. - Tomoya Mori; Toshiro Takase; Kuan-Chun Lan; Junko Yamane; Cantas Alev; Azuma Kimura; Kenji Osafune; Jun K. Yamashita; Tatsuya Akutsu; Hiroaki Kitano; Wataru Fujibuchi (BMC Bioinform., 2023)