Asymmetric Integration of Single-Cell Transcriptomic Data using Latent Dirichlet Allocation and Procrustes Analysis. - Mitsuhiro Eto; Wataru Hirota; Shigeto Seno; Hideo Matsuda (BIBM, 2018)

Emu: Enhancing Multilingual Sentence Embeddings with Semantic Specialization. - Wataru Hirota; Yoshihiko Suhara; Behzad Golshan; Wang-Chiew Tan (AAAI, 2020)

Machamp: A Generalized Entity Matching Benchmark. - Jin Wang 007; Yuliang Li 001; Wataru Hirota (CIKM, 2021)

Deep Entity Matching: Challenges and Opportunities. - Yuliang Li 001; Jinfeng Li; Yoshihiko Suhara; Jin Wang 007; Wataru Hirota; Wang-Chiew Tan (ACM J. Data Inf. Qual., 2021)

Machop: an end-to-end generalized entity matching framework. - Jin Wang 007; Yuliang Li 001; Wataru Hirota; Eser Kandogan (aiDM@SIGMOD, 2022)

Exploring Design of Multi-Agent LLM Dialogues for Research Ideation. - Keisuke Ueda; Wataru Hirota; Takuto Asakura; Takahiro Omi; Kosuke Takahashi; Kosuke Arima; Tatsuya Ishigaki (CoRR, 2025)