Reconstruction of highly heterogeneous gene-content evolution across the three domains of life. - Wataru Iwasaki 001; Toshihisa Takagi (ISMB/ECCB (Supplement of Bioinformatics), 2007)

Interactive, multiscale navigation of large and complicated biological networks. - Thanet Praneenararat; Toshihisa Takagi; Wataru Iwasaki 001 (Bioinform., 2011)

An inverse problem approach for automatically adjusting the parameters for rendering clouds using photographs. - Yoshinori Dobashi; Wataru Iwasaki 001; Ayumi Ono; Tsuyoshi Yamamoto; Yonghao Yue; Tomoyuki Nishita (ACM Trans. Graph., 2012)

Generalized Centroid Estimators in Bioinformatics - Michiaki Hamada; Hisanori Kiryu; Wataru Iwasaki 001; Kiyoshi Asai (CoRR, 2013)

The Spirit of Competition: To Win or Not To Win. - Teresa Szczepinska; Wataru Iwasaki 001; Thomas Abeel (PLoS Comput. Biol., 2013)

Crossing Borders for Science. - Sebastian J. Schultheiß; Joshua SungWoo Yang; Wataru Iwasaki 001; Shu-Hsi Lin; Angela Jean; Magali Michaut (PLoS Comput. Biol., 2014)

GroupTracker: Video tracking system for multiple animals under severe occlusion. - Tsukasa Fukunaga; Shoko Kubota; Shoji Oda; Wataru Iwasaki 001 (Comput. Biol. Chem., 2015)

MOCCS: Clarifying DNA-binding motif ambiguity using ChIP-Seq data. - Haruka Ozaki; Wataru Iwasaki 001 (Comput. Biol. Chem., 2016)

Inactivity periods and postural change speed can explain atypical postural change patterns of Caenorhabditis elegans mutants. - Tsukasa Fukunaga; Wataru Iwasaki 001 (BMC Bioinform., 2017)

SonicParanoid: fast, accurate and easy orthology inference. - Salvatore Cosentino; Wataru Iwasaki 001 (Bioinform., 2019)

The Quest for Orthologs benchmark service and consensus calls in 2020. - Adrian M. Altenhoff; Javier Garrayo-Ventas; Salvatore Cosentino; David Emms; Natasha M. Glover; Ana Hernández-Plaza; Yannis Nevers; Vicky Sundesha; Damian Szklarczyk; José María Fernández 001; Laia Codó; Quest for Orthologs Consortium; et al. (Nucleic Acids Res., 2020)

Mirage 2.0: fast and memory-efficient reconstruction of gene-content evolution considering heterogeneous evolutionary patterns among gene families. - Tsukasa Fukunaga; Wataru Iwasaki 001 (Bioinform., 2022)

The Quest for Orthologs orthology benchmark service in 2022. - Yannis Nevers; Tamsin E. M. Jones; Dushyanth Jyothi; Bethan Yates; Meritxell Ferret; Laura Portell-Silva; Laia Codó; Salvatore Cosentino; Marina Marcet-Houben; Anna Vlasova; Laetitia Poidevin; Arnaud Kress; et al. (Nucleic Acids Res., 2022)

dwctaxon, an R package for editing and validating taxonomic data in Darwin Core format. - Joel H. Nitta; Wataru Iwasaki 001 (J. Open Source Softw., 2024)