Rigorous shadowing of numerical solutions of ordinary differential equations by containment. - Wayne B. Hayes (2001)

Rigorous Shadowing of Numerical Solutions of Ordinary Differential Equations by Containment. - Wayne B. Hayes; Kenneth R. Jackson (SIAM J. Numer. Anal., 2003)

Reducing storage requirements for biological sequence comparison. - Michael Roberts; Wayne B. Hayes; Brian R. Hunt; Stephen M. Mount; James A. Yorke (Bioinform., 2004)

A Fast Shadowing Algorithm for High-Dimensional ODE Systems. - Wayne B. Hayes; Kenneth R. Jackson (SIAM J. Sci. Comput., 2007)

Robust and reliable defect control for Runge-Kutta methods. - Wayne H. Enright; Wayne B. Hayes (ACM Trans. Math. Softw., 2007)

Correct Rounding and a Hybrid Approach to Exact Floating-Point Summation. - Yongkang Zhu; Wayne B. Hayes (SIAM J. Sci. Comput., 2009)

Geometric Evolutionary Dynamics of Protein Interaction Networks. - Natasa Przulj; Oleksii Kuchaiev; Aleksandar Stevanovic; Wayne B. Hayes (Pacific Symposium on Biocomputing, 2010)

Algorithm 908: Online Exact Summation of Floating-Point Streams. - Yongkang Zhu; Wayne B. Hayes (ACM Trans. Math. Softw., 2010)

GraphCruch 2: Software tool for network modeling, alignment and clustering. - Oleksii Kuchaiev; Aleksandar Stevanovic; Wayne B. Hayes; Natasa Przulj (BMC Bioinform., 2011)

Tinkerbell Is Chaotic. - Alexandre Goldsztejn; Wayne B. Hayes; Pieter Collins (SIAM J. Appl. Dyn. Syst., 2011)

Automated quantitative description of spiral galaxy arm-segment structure. - Darren R. Davis; Wayne B. Hayes (CVPR, 2012)

Graphlet-based measures are suitable for biological network comparison. - Wayne B. Hayes; Kai Sun 005; Natasa Przulj (Bioinform., 2013)

A BMP-FGF Morphogen Toggle Switch Drives the Ultrasensitive Expression of Multiple Genes in the Developing Forebrain. - Shyam Srinivasan; Jia Sheng Hu; D. Spencer Currle; Ernest S. Fung; Wayne B. Hayes; Arthur D. Lander; Edwin S. Monuki (PLoS Comput. Biol., 2014)

SANA: simulated annealing far outperforms many other search algorithms for biological network alignment. - Nil Mamano; Wayne B. Hayes (Bioinform., 2017)

Graphettes: Constant-time determination of graphlet and orbit identity including (possibly disconnected) graphlets up to size 8. - Adib Hassan; Po-Chien Chung; Wayne B. Hayes (CoRR, 2017)

SANA NetGO: a combinatorial approach to using Gene Ontology (GO) terms to score network alignments. - Wayne B. Hayes; Nil Mamano (Bioinform., 2018)

Comparing Different Graphlet Measures for Evaluating Network Model Fits to BioGRID PPI Networks. - Sridevi Maharaj; Zarin Ohiba; Wayne B. Hayes (AlCoB, 2019)

BLANT - fast graphlet sampling tool. - Sridevi Maharaj; Brennan Tracy; Wayne B. Hayes (Bioinform., 2019)

Exact p-values for global network alignments via combinatorial analysis of shared GO terms. - Wayne B. Hayes (CoRR, 2020)

SL-GLAlign: improving local alignment of biological networks through simulated annealing. - Marianna Milano; Wayne B. Hayes; Pierangelo Veltri; Mario Cannataro; Pietro Hiram Guzzi (Netw. Model. Anal. Health Informatics Bioinform., 2020)

An Introductory Guide to Aligning Networks Using SANA, the Simulated Annealing Network Aligner. - Wayne B. Hayes (Protein-Protein Interaction Networks, 2020)

Common Neighbors Extension of the Sticky Model for PPI Networks Evaluated by Global and Local Graphlet Similarity. - Sridevi Maharaj; Taotao Qian; Zarin Ohiba; Wayne B. Hayes (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Multi-SANA: Comparing Topological Objective Functions for Multiple Network Alignment. - Wayne B. Hayes (IEEE DataPort, 2021)

No Cell Left behind: Automated, Stochastic, Physics-Based Tracking of Every Cell in a Dense, Growing Colony. - Huy Pham; Emile R. Shehada; Shawna Stahlheber; Kushagra Pandey; Wayne B. Hayes (Algorithms, 2022)

Multi-SANA: Comparing Measures of Topological Similarity for Multiple Network Alignment. - Shiyue Rong; Weisheng Wang; Viet Ly; Pasha Khosravi; William C. Wu; Jing Chen 053; Wayne B. Hayes (IEEE Trans. Evol. Comput., 2022)

Human Pose Recognition via Occlusion-Preserving Abstract Images. - Saad Manzur; Wayne B. Hayes (ECCV (82), 2024)

A Novel Graphlet-Based Community Detection Algorithm. - Pablo M. Redondo; Reza Mousapour; Wayne B. Hayes (J. Comput. Biol., 2025)

PoseBench3D: A Cross-Dataset Analysis Framework for 3D Human Pose Estimation. - Saad Manzur; Bryan Vela; Brandon Vela; Aditya Agrawal; Lan-Anh Dang-Vu; David Li; Wayne B. Hayes (CoRR, 2025)