Design, Implementation, and Evaluation of "FRiTrace". - Wayne Huang 002; J. L. Cong; Chien-Long Wu; Fan Zhao; Shyhtsun Felix Wu (SEC, 2005)

GPU Accelerated Smith-Waterman. - Yang Liu; Wayne Huang 002; John Johnson; Sheila Vaidya (International Conference on Computational Science (4), 2006)

WIST: toolkit for rapid, customized LIMS development. - Y. Wayne Huang; Adam P. Arkin; John-Marc Chandonia (Bioinform., 2011)

SeTES: A self-teaching expert system for the analysis, design, and prediction of gas production from unconventional gas resources. - George J. Moridis; Matthew T. Reagan; Heidi Anderson Kuzma; Thomas A. Blasingame; Y. Wayne Huang; Ralph Santos; Katie L. Boyle; Craig M. Freeman; Dilhan Ilk; Manuel Cossio; Srimoyee Bhattacharya; Michael Nikolaou (Comput. Geosci., 2013)