Recursive Function Theory and Numerical Analysis. - Webb Miller (J. Comput. Syst. Sci., 1970)

Automatic a priori round-off analysis - Part I: Arithmetic Conditions. - Webb Miller (Computing, 1972)

Toward Mechanical Verification of Properties of Roundoff Error Propagation - Webb Miller (STOC, 1973)

Toward Abstract Numerical Analysis. - Webb Miller (J. ACM, 1973)

Remarks on the complexity of roundoff analysis. - Webb Miller (Computing, 1974)

The Error in Interval Arithmetic. - Webb Miller (Interval Mathematics, 1975)

Computer Search for Numerical Instability. - Webb Miller (J. ACM, 1975)

Computational Complexity and Numerical Stability. - Webb Miller (SIAM J. Comput., 1975)

Software for Roundoff Analysis. - Webb Miller (ACM Trans. Math. Softw., 1975)

Graph Transformations for Roundoff Analysis. - Webb Miller (SIAM J. Comput., 1976)

Automatic Generation of Floating-Point Test Data. - Webb Miller; David L. Spooner (IEEE Trans. Software Eng., 1976)

A case for TOOLPACK. - Webb Miller (SIGNUM, 1978)

Software for Roundoff Analysis II. - Webb Miller; David L. Spooner (ACM Trans. Math. Softw., 1978)

Algorithm 532: Software for Roundoff Analysis [Z]. - Webb Miller; David L. Spooner (ACM Trans. Math. Softw., 1978)

Reducibility Among Floating-Point Graphs. - Donald B. Johnson 001; Webb Miller; Brian Minnihan; Celia Wrathall (J. ACM, 1979)

A File Comparison Program. - Webb Miller; Eugene W. Myers (Softw. Pract. Exp., 1985)

Side-effects in Automatic File Updating. - Webb Miller; Eugene W. Myers (Softw. Pract. Exp., 1986)

Optimal alignments in linear space. - Eugene W. Myers; Webb Miller (Comput. Appl. Biosci., 1988)

A Simple Row-replacement Method. - Webb Miller; Eugene W. Myers (Softw. Pract. Exp., 1988)

Row Replacement Algorithms for Screen Editors. - Eugene W. Myers; Webb Miller (ACM Trans. Program. Lang. Syst., 1989)

A space-efficient algorithm for local similarities. - Xiaoqiu Huang 001; Ross C. Hardison; Webb Miller (Comput. Appl. Biosci., 1990)

An algorithm for searching restriction maps. - Webb Miller; James Ostell; Kenneth E. Rudd (Comput. Appl. Biosci., 1990)

An O(NP) Sequence Comparison Algorithm. - Sun Wu; Udi Manber; Gene Myers; Webb Miller (Inf. Process. Lett., 1990)

Improved algorithms for searching restriction maps. - Webb Miller; John R. Barr 002; Kenneth E. Rudd (Comput. Appl. Biosci., 1991)

Aligning two sequences within a specified diagonal band. - Kun-Mao Chao; William R. Pearson; Webb Miller (Comput. Appl. Biosci., 1992)

Parallelization of a local similarity algorithm. - Xiaoqiu Huang 001; Webb Miller; Scott Schwartz; Ross C. Hardison (Comput. Appl. Biosci., 1992)

Locating well-conserved regions within a pairwise alignment. - Kun-Mao Chao; Ross C. Hardison; Webb Miller (Comput. Appl. Biosci., 1993)

Building multiple alignments from pairwise alignments. - Webb Miller (Comput. Appl. Biosci., 1993)

Parametric Recomuting in Alignment Graphs. - Xiaoqiu Huang 001; Pavel A. Pevzner; Webb Miller (CPM, 1994)

A note about computing all local alignments. - Webb Miller; Mark Boguski (Comput. Appl. Biosci., 1994)

Recent Developments in Linear-Space Alignment Methods: A Survey. - Kun-Mao Chao; Ross C. Hardison; Webb Miller (J. Comput. Biol., 1994)

Constructing Aligned Sequence Blocks. - Webb Miller; Mark Boguski; Balaji Raghavachari; Zheng Zhang 004; Ross C. Hardison (J. Comput. Biol., 1994)

Chaining Multiple-Alignment Blocks. - Zheng Zhang 004; Balaji Raghavachari; Ross C. Hardison; Webb Miller (J. Comput. Biol., 1994)

A database for globin gene expression data. - Webb Miller; Ahmed Elsherbini; Jamie Peck; Cathy Riemer; Scott Schwartz; Nikola Stojanovic; Ross C. Hardison (HICSS (5), 1995)

Chaining Multiple-Alignment Fragments in Sub-Quadratic Time. - Gene Myers; Webb Miller (SODA, 1995)

Linear-Space Algorithms that Build Local Alignments from Fragments. - Kun-Mao Chao; Webb Miller (Algorithmica, 1995)

A local alignment tool for very long DNA sequences. - Kun-Mao Chao; Jinghui Zhang; James Ostell; Webb Miller (Comput. Appl. Biosci., 1995)

Local Multiple Alignment Via Subgraph Enumeration. - Z. Zhang; B. He; Webb Miller (Discret. Appl. Math., 1996)

Alignment-to-Alignment Editing with "Move Gap" Operations. - Martin Fürer; Webb Miller (Int. J. Found. Comput. Sci., 1996)

Progressive Multiple Alignment with Constraints. - Gene Myers; Sanford Selznick; Zheng Zhang 004; Webb Miller (J. Comput. Biol., 1996)

A Linear-Time Algorithm for the 1-Mismatch Problem. - Nikola Stojanovic; Piotr Berman; Deborah Gumucio; Ross C. Hardison; Webb Miller (WADS, 1997)

A tool for aligning very similar DNA sequences. - Kun-Mao Chao; Jinghui Zhang; James Ostell; Webb Miller (Comput. Appl. Biosci., 1997)

Aligning a DNA Sequence with a Protein Sequence. - Zheng Zhang 004; William R. Pearson; Webb Miller (J. Comput. Biol., 1997)

Alignments without Low-Scoring Regions. - Zheng Zhang 004; Piotr Berman; Webb Miller (J. Comput. Biol., 1998)

Post-processing long pairwise alignments. - Zheng Zhang 004; Piotr Berman; Thomas Wiehe; Webb Miller (Bioinform., 1999)

Genome Sequence Comparisons: Hurdles in the Fast Lane to Functional Genomics. - Thomas Wiehe; Roderic Guigó; Webb Miller (Briefings Bioinform., 2000)

Winnowing Sequences from a Database Search. - Piotr Berman; Zheng Zhang 004; Yuri I. Wolf; Eugene V. Koonin; Webb Miller (J. Comput. Biol., 2000)

A Greedy Algorithm for Aligning DNA Sequences. - Zheng Zhang 004; Scott Schwartz; Lukas Wagner 002; Webb Miller (J. Comput. Biol., 2000)

Comparison of genomic DNA sequences: solved and unsolved problems. - Webb Miller (Bioinform., 2001)

Significance Of inter-species matches when evolutionary rate varies. - Jia Li 001; Webb Miller (RECOMB, 2002)

Aligning two fragmented sequences. - Vamsi Veeramachaneni; Piotr Berman; Webb Miller (Discret. Appl. Math., 2003)

Significance of Interspecies Matches when Evolutionary Rate Varies. - Jia Li 001; Webb Miller (J. Comput. Biol., 2003)

EnteriX 2003: visualization tools for genome alignments of Enterobacteriaceae. - Liliana Florea; Michael McClelland; Cathy Riemer; Scott Schwartz; Webb Miller (Nucleic Acids Res., 2003)

MultiPipMaker and supporting tools: alignments and analysis of multiple genomic DNA sequences. - Scott Schwartz; Laura Elnitski; Mei Li; Matthew T. Weirauch; Cathy Riemer; Arian Smit; Eric D. Green; Ross C. Hardison; Webb Miller (Nucleic Acids Res., 2003)

EST clustering error evaluation and correction. - Ji-Ping Z. Wang; Bruce G. Lindsay 002; James H. Leebens-Mack; Liying Cui; P. Kerr Wall; Webb Colby Miller; Claude W. dePamphilis (Bioinform., 2004)

Improvements in the HbVar database of human hemoglobin variants and thalassemia mutations for population and sequence variation studies. - George P. Patrinos; Belinda Giardine; Cathy Riemer; Webb Miller; David H. K. Chui; Nicholas P. Anagnou; Henri Wajcman; Ross C. Hardison (Nucleic Acids Res., 2004)

Improvements to GALA and dbERGE II: databases featuring genomic sequence alignment, annotation and experimental results. - Laura Elnitski; Belinda Giardine; Prachi Shah; Yi Zhang; Cathy Riemer; Matthew T. Weirauch; Richard Burhans; Webb Miller; Ross C. Hardison (Nucleic Acids Res., 2005)

Controlling Size When Aligning Multiple Genomic Sequences with Duplications. - Minmei Hou; Piotr Berman; Louxin Zhang; Webb Miller (WABI, 2006)

Identification and Classification of Conserved RNA Secondary Structures in the Human Genome. - Jakob Skou Pedersen; Gill Bejerano; Adam C. Siepel; Kate R. Rosenbloom; Kerstin Lindblad-Toh; Eric S. Lander; Jim Kent; Webb Miller; David Haussler (PLoS Comput. Biol., 2006)

A Heuristic Algorithm for Reconstructing Ancestral Gene Orders with Duplications. - Jian Ma 004; Aakrosh Ratan; Louxin Zhang; Webb Miller; David Haussler (RECOMB-CG, 2007)

Approximating the spanning star forest problem and its applications to genomic sequence alignment. - C. Thach Nguyen; Jian Shen; Minmei Hou; Li Sheng 001; Webb Miller; Louxin Zhang (SODA, 2007)

Reconstructing the Evolutionary History of Complex Human Gene Clusters. - Yu Zhang 002; Giltae Song; Tomás Vinar; Eric D. Green; Adam C. Siepel; Webb Miller (RECOMB, 2008)

DUPCAR: Reconstructing Contiguous Ancestral Regions with Duplications. - Jian Ma 004; Aakrosh Ratan; Brian J. Raney; Bernard B. Suh; Louxin Zhang; Webb Miller; David Haussler (J. Comput. Biol., 2008)

The UCSC Genome Browser Database: 2008 update. - Donna Karolchik; Robert M. Kuhn; Robert Baertsch; Galt P. Barber; Hiram Clawson; Mark Diekhans; Belinda Giardine; Rachel A. Harte; Angela S. Hinrichs; Fan Hsu; Kord M. Kober; Webb Miller; et al. (Nucleic Acids Res., 2008)

The infinite sites model of genome evolution. - Jian Ma 004; Aakrosh Ratan; Brian J. Raney; Bernard B. Suh; Webb Miller; David Haussler (Proc. Natl. Acad. Sci. USA, 2008)

Approximating the Spanning Star Forest Problem and Its Application to Genomic Sequence Alignment. - C. Thach Nguyen; Jian Shen; Minmei Hou; Li Sheng 001; Webb Miller; Louxin Zhang (SIAM J. Comput., 2008)

Session Introduction. - Bernard M. E. Moret; Webb Miller; Pavel A. Pevzner; David Sankoff (Pacific Symposium on Biocomputing, 2009)

Simultaneous History Reconstruction for Complex Gene Clusters in Multiple Species. - Yu Zhang 002; Giltae Song; Chih-Hao Hsu; Webb Miller (Pacific Symposium on Biocomputing, 2009)

Aligning Two Genomic Sequences That Contain Duplications. - Minmei Hou; Cathy Riemer; Piotr Berman; Ross C. Hardison; Webb Miller (RECOMB-CG, 2009)

Whole-Genome Analysis of Gene Conversion Events. - Chih-Hao Hsu; Yu Zhang 002; Ross C. Hardison; Webb Miller (RECOMB-CG, 2009)

Inferring the Recent Duplication History of a Gene Cluster. - Giltae Song; Louxin Zhang; Tomás Vinar; Webb Miller (RECOMB-CG, 2009)

CleaveLand: a pipeline for using degradome data to find cleaved small RNA targets. - Charles Addo-Quaye; Webb Miller; Michael J. Axtell (Bioinform., 2009)

Evolutionary History Reconstruction for Mammalian Complex Gene Clusters. - Yu Zhang 002; Giltae Song; Tomás Vinar; Eric D. Green; Adam C. Siepel; Webb Miller (J. Comput. Biol., 2009)

Optimization Methods for Selecting Founder Populations for Captive Breeding of Endangered Species. - Webb Miller; Stephen J. Wright 001; Yu Zhang 002; Stephan C. Schuster; Vanessa M. Hayes (Pacific Symposium on Biocomputing, 2010)

Calling SNPs without a reference sequence. - Aakrosh Ratan; Yu Zhang 002; Vanessa M. Hayes; Stephan C. Schuster; Webb Miller (BMC Bioinform., 2010)

An Effective Method for Detecting Gene Conversion Events in Whole Genomes. - Chih-Hao Hsu; Yu Zhang 002; Ross C. Hardison; Eric D. Green; Webb Miller (J. Comput. Biol., 2010)

CAGE: Combinatorial Analysis of Gene-Cluster Evolution. - Giltae Song; Louxin Zhang; Tomás Vinar; Webb Miller (J. Comput. Biol., 2010)

Evaluation of methods for detecting conversion events in gene clusters. - Giltae Song; Chih-Hao Hsu; Cathy Riemer; Webb Miller (BMC Bioinform., 2011)

Updates of the HbVar database of human hemoglobin variants and thalassemia mutations. - Belinda Giardine; Joseph Borg; Emmanouil Viennas; Cristiana Pavlidis; Kamran Moradkhani; Philippe Joly; Marina Bartsakoulia; Cathy Riemer; Webb Miller; Giannis Tzimas; Henri Wajcman; Ross C. Hardison; et al. (Nucleic Acids Res., 2014)

Identification of indels in next-generation sequencing data. - Aakrosh Ratan; Thomas L. Olson; Thomas P. Loughran; Webb Miller (BMC Bioinform., 2015)