Molecular enhanced sampling with autoencoders: On-the-fly collective variable discovery and accelerated free energy landscape exploration. - Wei Chen 044; Andrew L. Ferguson (J. Comput. Chem., 2018)

Nonlinear Discovery of Slow Molecular Modes using Hierarchical Dynamics Encoders. - Wei Chen 044; Hythem Sidky; Andrew L. Ferguson (CoRR, 2019)

Capabilities and Limitations of Time-lagged Autoencoders for Slow Mode Discovery in Dynamical Systems. - Wei Chen 044; Hythem Sidky; Andrew L. Ferguson (CoRR, 2019)