A haplotype-based framework for group-wise transmission/disequilibrium tests for rare variant association analysis. - Rui Chen 021; Qiang Wei; Xiaowei Zhan; Xue Zhong; James S. Sutcliffe; Nancy J. Cox; Edwin H. Cook Jr.; Chun Li; Wei Chen 074; Bingshan Li (Bioinform., 2015)

A Bayesian framework for de novo mutation calling in parents-offspring trios. - Qiang Wei; Xiaowei Zhan; Xue Zhong; Yongzhuang Liu; Yujun Han; Wei Chen 074; Bingshan Li (Bioinform., 2015)

DISSCO: direct imputation of summary statistics allowing covariates. - Zheng Xu 010; Qing Duan; Song Yan; Wei Chen 074; Mingyao Li; Ethan M. Lange; Yun Li (Bioinform., 2015)

An integrative analysis of ATAC-seq and RNA-seq data in activated, CD4+CD45RO+CD196+ human T cells treated with IL-1B and IL-23 with or without PGE2. - Ting Wang 003; Richard H. Duerr; Wei Chen 074 (BCB, 2016)

A computational method for genotype calling in family-based sequencing data. - Lun-Ching Chang; Bingshan Li; Zhou Fang; Scott Vrieze; Matthew McGue; William G. Iacono; George C. Tseng; Wei Chen 074 (BMC Bioinform., 2016)

FastGGM: An Efficient Algorithm for the Inference of Gaussian Graphical Model in Biological Networks. - Ting Wang 003; Zhao Ren; Ying Ding 003; Zhou Fang; Zhe Sun; Matthew L. MacDonald; Robert A. Sweet; Jieru Wang; Wei Chen 074 (PLoS Comput. Biol., 2016)

Bayesian integrative model for multi-omics data with missingness. - Zhou Fang; Tianzhou Ma; Gong Tang; Li Zhu; Qi Yan 008; Ting Wang 003; Juan C. Celedón; Wei Chen 074; George C. Tseng (Bioinform., 2018)

DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data. - Zhe Sun; Ting Wang 003; Ke Deng; Xiao-Feng Wang; Robert Lafyatis; Ying Ding 003; Ming Hu 001; Wei Chen 074 (Bioinform., 2018)

KMgene: a unified R package for gene-based association analysis for complex traits. - Qi Yan 008; Zhou Fang; Wei Chen 074 (Bioinform., 2018)

SILGGM: An extensive R package for efficient statistical inference in large-scale gene networks. - Rong Zhang; Zhao Ren; Wei Chen 074 (PLoS Comput. Biol., 2018)

Device-Free Acoustic Motion Tracking over Targets with Large Sizes. - Yuqi Li; Ruirong Chen; Xingzhe Song; Wei Gao 006; Wei Chen 074; Erick Forno (MASS, 2019)

SpiroSonic: monitoring human lung function via acoustic sensing on commodity smartphones. - Xingzhe Song; Boyuan Yang 001; Ge Yang; Ruirong Chen; Erick Forno; Wei Chen 074; Wei Gao 006 (MobiCom, 2020)

Deep Large-Scale Multi-task Learning Network for Gene Expression Inference. - Kamran Ghasedi Dizaji; Wei Chen 074; Heng Huang (RECOMB, 2020)

Artificial-cell-type aware cell-type classification in CITE-seq. - Qiuyu Lian; Hongyi Xin; Jianzhu Ma; Liza Konnikova; Wei Chen 074; Jin Gu; Kong Chen (Bioinform., 2020)

CSMD: a computational subtraction-based microbiome discovery pipeline for species-level characterization of clinical metagenomic samples. - Yu Liu; Paul W. Bible; Bin Zou; Qiaoxing Liang; Cong Dong; Xiaofeng Wen; Yan Li; Xiaofei Ge; Xifang Li; Xiuli Deng; Rong Ma; Shixin Guo; et al. (Bioinform., 2020)

Deep-learning-based prediction of late age-related macular degeneration progression. - Qi Yan 008; Daniel E. Weeks; Hongyi Xin; Anand Swaroop; Emily Y. Chew; Heng Huang; Ying Ding 003; Wei Chen 074 (Nat. Mach. Intell., 2020)

CHIT: an allele-specific method for testing the association between molecular quantitative traits and phenotype-genotype interaction. - Qi Yan 008; Erick Forno; Juan C. Celedón; Wei Chen 074; Daniel E. Weeks (Bioinform., 2021)

Deep Large-Scale Multitask Learning Network for Gene Expression Inference. - Kamran Ghasedi Dizaji; Wei Chen 074; Heng Huang (J. Comput. Biol., 2021)

Multi-modal Genotype and Phenotype Mutual Learning to Enhance Single-Modal Input Based Longitudinal Outcome Prediction. - Alireza Ganjdanesh; Jipeng Zhang; Wei Chen 074; Heng Huang (RECOMB, 2022)

Out-Clinic Pulmonary Disease Evaluation via Acoustic Sensing and Multi-Task Learning on Commodity Smartphones. - Xiangyu Yin 002; Kai Huang 007; Erick Forno; Wei Chen 074; Heng Huang; Wei Gao 006 (SenSys, 2022)

Robust and accurate estimation of cellular fraction from tissue omics data via ensemble deconvolution. - Manqi Cai; Molin Yue; Tianmeng Chen; Jinling Liu; Erick Forno; Xinghua Lu 001; Timothy Billiar; Juan C. Celedón; Chris McKennan; Wei Chen 074; Jiebiao Wang (Bioinform., 2022)

Multimodal Genotype and Phenotype Data Integration to Improve Partial Data-Based Longitudinal Prediction. - Alireza Ganjdanesh; Jipeng Zhang; Sarah Yan; Wei Chen 074; Heng Huang (J. Comput. Biol., 2022)

PTEase: Objective Airway Examination for Pulmonary Telemedicine using Commodity Smartphones. - Xiangyu Yin 002; Kai Huang 007; Erick Forno; Wei Chen 074; Heng Huang; Wei Gao 006 (MobiSys, 2023)

Dynamic Prediction using Time-Dependent Cox Survival Neural Network. - Lang Zeng; Jipeng Zhang; Wei Chen 074; Ying Ding 003 (CoRR, 2023)