CaBind_MCNN: Identifying Potential Calcium Channel Blocker Targets by Predicting Calcium-Binding Sites in Ion Channels and Ion Transporters Using Protein Language Models and Multiscale Feature Extraction. - Yan-Yun Chang; Yu-Chen Liu 009; Wei-En Jhang; Sin-Siang Wei; Yu-Yen Ou (J. Chem. Inf. Model., 2025)

RAG_MCNNIL6: A Retrieval-Augmented Multi-Window Convolutional Network for Accurate Prediction of IL-6 Inducing Epitopes. - Cheng-Che Chuang; Yu-Chen Liu 009; Wei-En Jhang; Sin-Siang Wei; Yu-Yen Ou (J. Chem. Inf. Model., 2025)

RTK_RAG: Leveraging Retrieval Augmented Generation with Multi-Window Convolutional Neural Networks for Superior ATP Binding Site Prediction in Receptor Tyrosine Kinases. - Sin-Siang Wei; Wei-En Jhang; Yu-Chen Liu 009; Cheng-Che Chuang; Yu-Yen Ou (J. Chem. Inf. Model., 2025)