Nexplorer: phylogeny-based exploration of sequence family data. - Vivek Gopalan; Wei-Gang Qiu; Michael Z. Chen; Arlin Stoltzfus (Bioinform., 2006)

Bio: : NEXUS: a Perl API for the NEXUS format for comparative biological data. - Thomas Hladish; Vivek Gopalan; Chengzhi Liang; Wei-Gang Qiu; Peter Yang; Arlin Stoltzfus (BMC Bioinform., 2007)

BorreliaBase: a phylogeny-centered browser of Borrelia genomes. - Lia Di; Pedro E. Pagan; Daniel Packer; Che L. Martin; Saymon Akther; Girish Ramrattan; Emmanuel F. Mongodin; Claire M. Fraser; Steven E. Schutzer; Benjamin J. Luft; Sherwood R. Casjens; Wei-Gang Qiu (BMC Bioinform., 2014)

Bow-tie signaling in c-di-GMP: Machine learning in a simple biochemical network. - Jinyuan Yan; Maxime Deforet; Kerry E. Boyle; Rayees Rahman; Raymond Liang; Chinweike Okegbe; Lars E. P. Dietrich; Weigang Qiu; João B. Xavier (PLoS Comput. Biol., 2017)

BpWrapper: BioPerl-based sequence and tree utilities for rapid prototyping of bioinformatics pipelines. - Yözen Hernández; Rocky Bernstein; Pedro E. Pagan; Levy Vargas; William McCaig; Girish Ramrattan; Saymon Akther; Amanda Larracuente; Lia Di; Filipe G. Vieira; Wei-Gang Qiu (BMC Bioinform., 2018)

Systems-level analysis of NalD mutation, a recurrent driver of rapid drug resistance in acute Pseudomonas aeruginosa infection. - Jinyuan Yan; Henri Estanbouli; Chen Liao; Wook Kim; Jonathan M. Monk; Rayees Rahman; Mini Kamboj; Bernhard O. Palsson; Weigang Qiu; João B. Xavier (PLoS Comput. Biol., 2019)