Population Shape Collapse in Large Deformation Registration of MR Brain Images. - Wei Shao 008; Gary E. Christensen; Hans J. Johnson; Joo Hyun Song; Oguz C. Durumeric; Casey P. Johnson; Joseph J. Shaffer; Vincent A. Magnotta; Jess G. Fiedorowicz; John A. Wemmie (CVPR Workshops, 2016)

Detecting Out-of-Phase Ventilation Using 4DCT to Improve Radiation Therapy for Lung Cancer. - Wei Shao 008; Taylor J. Patton; Sarah E. Gerard; Yue Pan; Joseph M. Reinhardt; John E. Bayouth; Oguz C. Durumeric; Gary E. Christensen (RAMBO+BIA+TIA@MICCAI, 2018)

Sensitivity analysis of Jacobian determinant used in treatment planning for lung cancer. - Wei Shao 008; Sarah E. Gerard; Yue Pan; Taylor J. Patton; Joseph M. Reinhardt; Oguz C. Durumeric; John E. Bayouth; Gary E. Christensen (Image Processing, 2018)

Nondestructive Measurement of Conformal Coating Thickness on Printed Circuit Board With Ultra-High Resolution Optical Coherence Tomography. - Xiao Shao; Xinjian Chen 001; Xiaojun Yu; Ya Hu; Linbo Liu; Fei Shi; Wei Shao 008; Jianhua Mo 002 (IEEE Access, 2019)

Deep Neural Networks and Kernel Density Estimation for Detecting Human Activity Patterns from Geo-Tagged Images: A Case Study of Birdwatching on Flickr. - Caglar Koylu; Chang Zhao; Wei Shao 008 (ISPRS Int. J. Geo Inf., 2019)

CorrSigNet: Learning CORRelated Prostate Cancer SIGnatures from Radiology and Pathology Images for Improved Computer Aided Diagnosis. - Indrani Bhattacharya; Arun Seetharaman; Wei Shao 008; Rewa Sood; Christian A. Kunder; Richard E. Fan; Simon John Christoph Soerensen; Jeffrey B. Wang; Pejman Ghanouni; Nikola C. Teslovich; James D. Brooks; Geoffrey A. Sonn; et al. (MICCAI (2), 2020)

N-Phase Local Expansion Ratio for Characterizing Out-of-Phase Lung Ventilation. - Wei Shao 008; Taylor J. Patton; Sarah E. Gerard; Yue Pan; Joseph M. Reinhardt; Oguz C. Durumeric; John E. Bayouth; Gary E. Christensen (IEEE Trans. Medical Imaging, 2020)

Weakly Supervised Registration of Prostate MRI and Histopathology Images. - Wei Shao 008; Indrani Bhattacharya; Simon John Christoph Soerensen; Christian A. Kunder; Jeffrey B. Wang; Richard E. Fan; Pejman Ghanouni; James D. Brooks; Geoffrey A. Sonn; Mirabela Rusu (MICCAI (4), 2021)

The Learn2Reg 2021 MICCAI Grand Challenge (PIMed Team). - Wei Shao 008; Sulaiman Vesal; David S. Lim; Cynthia Xinran Li; Negar Golestani; Ahmed Alsinan; Richard E. Fan; Geoffrey A. Sonn; Mirabela Rusu (MIDOG/MOOD/Learn2Reg@MICCAI, 2021)

ProGNet: prostate gland segmentation on MRI with deep learning. - Simon John Christoph Soerensen; Richard E. Fan; Arun Seetharaman; Leo C. Chen; Wei Shao 008; Indrani Bhattacharya; Michael Borre; Benjamin Chung; Katherine J. To'o; Geoffrey A. Sonn; Mirabela Rusu (Image Processing, 2021)

Bridging the gap between prostate radiology and pathology through machine learning. - Indrani Bhattacharya; David S. Lim; Han Lin Aung; Xingchen Liu; Arun Seetharaman; Christian A. Kunder; Wei Shao 008; Simon John Christoph Soerensen; Richard E. Fan; Pejman Ghanouni; Katherine J. To'o; James D. Brooks; et al. (CoRR, 2021)

Learn2Reg: comprehensive multi-task medical image registration challenge, dataset and evaluation in the era of deep learning. - Alessa Hering; Lasse Hansen; Tony C. W. Mok; Albert C. S. Chung; Hanna Siebert; Stephanie Häger; Annkristin Lange; Sven Kuckertz; Stefan Heldmann; Wei Shao 008; Sulaiman Vesal; Mirabela Rusu; et al. (CoRR, 2021)

ProsRegNet: A deep learning framework for registration of MRI and histopathology images of the prostate. - Wei Shao 008; Linda Banh; Christian A. Kunder; Richard E. Fan; Simon John Christoph Soerensen; Jeffrey B. Wang; Nikola C. Teslovich; Nikhil Madhuripan; Anugayathri Jawahar; Pejman Ghanouni; James D. Brooks; Geoffrey A. Sonn; et al. (Medical Image Anal., 2021)

Geodesic density regression for correcting 4DCT pulmonary respiratory motion artifacts. - Wei Shao 008; Yue Pan; Oguz C. Durumeric; Joseph M. Reinhardt; John E. Bayouth; Mirabela Rusu; Gary E. Christensen (Medical Image Anal., 2021)

3D Registration of pre-surgical prostate MRI and histopathology images via super-resolution volume reconstruction. - Rewa Sood; Wei Shao 008; Christian Kunder; Nikola C. Teslovich; Jeffrey B. Wang; Simon John Christoph Soerensen; Nikhil Madhuripan; Anugayathri Jawahar; James D. Brooks; Pejman Ghanouni; Richard E. Fan; Geoffrey A. Sonn; et al. (Medical Image Anal., 2021)

Integrating zonal priors and pathomic MRI biomarkers for improved aggressive prostate cancer detection on MRI. - Indrani Bhattacharya; Wei Shao 008; Simon J. C. Soerensen; Richard E. Fan; Jeffrey B. Wang; Christian Kunder; Pejman Ghanouni; Geoffrey A. Sonn; Mirabela Rusu (Computer-Aided Diagnosis, 2022)

Deep learning-based pseudo-mass spectrometry imaging analysis for precision medicine. - Xiaotao Shen; Wei Shao 008; Chuchu Wang; Liang Liang; Songjie Chen; Sai Zhang; Mirabela Rusu; Michael P. Snyder (Briefings Bioinform., 2022)

Robust Measures of Image-Registration-Derived Lung Biomechanics in SPIROMICS. - Yue Pan; Di Wang; Muhammad F. A. Chaudhary; Wei Shao 008; Sarah E. Gerard; Oguz C. Durumeric; Surya P. Bhatt; R. Graham Barr; Eric A. Hoffman; Joseph M. Reinhardt; Gary E. Christensen (J. Imaging, 2022)

Selective identification and localization of indolent and aggressive prostate cancers via CorrSigNIA: an MRI-pathology correlation and deep learning framework. - Indrani Bhattacharya; Arun Seetharaman; Christian Kunder; Wei Shao 008; Leo C. Chen; Simon John Christoph Soerensen; Jeffrey B. Wang; Nikola C. Teslovich; Richard E. Fan; Pejman Ghanouni; James D. Brooks; Geoffrey A. Sonn; et al. (Medical Image Anal., 2022)

Consistency-Guided Meta-learning for Bootstrapping Semi-supervised Medical Image Segmentation. - Qingyue Wei; Lequan Yu; Xianhang Li; Wei Shao 008; Cihang Xie; Lei Xing 001; Yuyin Zhou (MICCAI (4), 2023)

Image Registration of In Vivo Micro-Ultrasound and Ex Vivo Pseudo-Whole Mount Histopathology Images of the Prostate: A Proof-of-Concept Study. - Muhammad Imran 013; Brianna Nguyen; Jake Pensa; Sara M. Falzarano; Anthony E. Sisk; Muxuan Liang; John Michael DiBianco; Li-Ming Su; Yuyin Zhou; Wayne G. Brisbane; Wei Shao 008 (CoRR, 2023)

Learn2Reg: Comprehensive Multi-Task Medical Image Registration Challenge, Dataset and Evaluation in the Era of Deep Learning. - Alessa Hering; Lasse Hansen; Tony C. W. Mok; Albert C. S. Chung; Hanna Siebert; Stephanie Häger; Annkristin Lange; Sven Kuckertz; Stefan Heldmann; Wei Shao 008; Sulaiman Vesal; Mirabela Rusu; et al. (IEEE Trans. Medical Imaging, 2023)

Unleashing the Potential of SAM for Medical Adaptation via Hierarchical Decoding. - Zhiheng Cheng; Qingyue Wei; Hongru Zhu; Yan Wang 033; Liangqiong Qu; Wei Shao 008; Yuyin Zhou (CVPR, 2024)

PET Image Denoising Based on 3D Denoising Diffusion Probabilistic Model: Evaluations on Total-Body Datasets. - Boxiao Yu; Savas Ozdemir; Yafei Dong; Wei Shao 008; Kuangyu Shi; Kuang Gong (MICCAI (7), 2024)

Transformer-Based Hierarchical Model for Non-Small Cell Lung Cancer Detection and Classification. - Muhammad Imran 013; Bushra Haq; Ersin Elbasi; Ahmet E. Topcu; Wei Shao 008 (IEEE Access, 2024)

Image registration of in vivo micro-ultrasound and ex vivo pseudo-whole mount histopathology images of the prostate: A proof-of-concept study. - Muhammad Imran 013; Brianna Nguyen; Jake Pensa; Sara M. Falzarano; Anthony E. Sisk; Muxuan Liang; John Michael DiBianco; Li-Ming Su; Yuyin Zhou; Jason P. Joseph; Wayne G. Brisbane; Wei Shao 008 (Biomed. Signal Process. Control., 2024)

A flexible 2.5D medical image segmentation approach with in-slice and cross-slice attention. - Amarjeet Kumar; Hongxu Jiang; Muhammad Imran 013; Cyndi Valdes; Gabriela Leon; Dahyun Kang; Parvathi Nataraj; Yuyin Zhou; Michael D. Weiss; Wei Shao 008 (Comput. Biol. Medicine, 2024)

RAPHIA: A deep learning pipeline for the registration of MRI and whole-mount histopathology images of the prostate. - Wei Shao 008; Sulaiman Vesal; Simon J. C. Soerensen; Indrani Bhattacharya; Negar Golestani; Rikiya Yamashita; Christian A. Kunder; Richard E. Fan; Pejman Ghanouni; James D. Brooks; Geoffrey A. Sonn; Mirabela Rusu (Comput. Biol. Medicine, 2024)

CIS-UNet: Multi-class segmentation of the aorta in computed tomography angiography via context-aware shifted window self-attention. - Muhammad Imran 013; Jonathan R. Krebs; Veera Rajasekhar Reddy Gopu; Brian Fazzone; Vishal Balaji Sivaraman; Amarjeet Kumar; Chelsea Viscardi; Robert Evans Heithaus; Benjamin Shickel; Yuyin Zhou; Michol A. Cooper; Wei Shao 008 (Comput. Medical Imaging Graph., 2024)

MicroSegNet: A deep learning approach for prostate segmentation on micro-ultrasound images. - Hongxu Jiang; Muhammad Imran 013; Preethika Muralidharan; Anjali Patel; Jake Pensa; Muxuan Liang; Tarik Benidir; Joseph R. Grajo; Jason P. Joseph; Russell Terry; John Michael DiBianco; Li-Ming Su; et al. (Comput. Medical Imaging Graph., 2024)

RetinaRegNet: A Versatile Approach for Retinal Image Registration. - Vishal Balaji Sivaraman; Muhammad Imran 013; Qingyue Wei; Preethika Muralidharan; Michelle R. Tamplin; Isabella M. Grumbach; Randy H. Kardon; Jui-Kai Wang; Yuyin Zhou; Wei Shao 008 (CoRR, 2024)

Fast-DDPM: Fast Denoising Diffusion Probabilistic Models for Medical Image-to-Image Generation. - Hongxu Jiang; Muhammad Imran 013; Linhai Ma; Teng Zhang; Yuyin Zhou; Muxuan Liang; Kuang Gong; Wei Shao 008 (CoRR, 2024)

Mamba-R: Vision Mamba ALSO Needs Registers. - Feng Wang 047; Jiahao Wang 001; Sucheng Ren; Guoyizhe Wei; Jieru Mei; Wei Shao 008; Yuyin Zhou; Alan L. Yuille; Cihang Xie (CoRR, 2024)

Causal Image Modeling for Efficient Visual Understanding. - Feng Wang 047; Timing Yang; Yaodong Yu; Sucheng Ren; Guoyizhe Wei; Angtian Wang; Wei Shao 008; Yuyin Zhou; Alan L. Yuille; Cihang Xie (CoRR, 2024)

Mask Enhanced Deeply Supervised Prostate Cancer Detection on B-mode Micro-Ultrasound. - Lichun Zhang; Steve Ran Zhou; Moon Hyung Choi; Jeong Hoon Lee 001; Shengtian Sang; Adam Kinnaird; Wayne G. Brisbane; Giovanni Lughezzani; Davide Maffei; Vittorio Fasulo; Patrick Albers; Sulaiman Vesal; et al. (CoRR, 2024)

Efficient MedSAMs: Segment Anything in Medical Images on Laptop. - Jun Ma 016; Feifei Li 010; Sumin Kim; Reza Asakereh; Bao-Hiep Le; Dang-Khoa Nguyen-Vu; Alexander Pfefferle; Muxin Wei; Ruochen Gao; Donghang Lyu; Songxiao Yang; Lennart Purucker; et al. (CoRR, 2024)

Mamba-Reg: Vision Mamba Also Needs Registers. - Feng Wang 047; Jiahao Wang 001; Sucheng Ren; Guoyizhe Wei; Jieru Mei; Wei Shao 008; Yuyin Zhou; Alan L. Yuille; Cihang Xie (CVPR, 2025)

Adventurer: Optimizing Vision Mamba Architecture Designs for Efficiency. - Feng Wang 047; Timing Yang; Yaodong Yu; Sucheng Ren; Guoyizhe Wei; Angtian Wang; Wei Shao 008; Yuyin Zhou; Alan L. Yuille; Cihang Xie (CVPR, 2025)

RetinaRegNet: A zero-shot approach for retinal image registration. - Vishal Balaji Sivaraman; Muhammad Imran 013; Qingyue Wei; Preethika Muralidharan; Michelle R. Tamplin; Isabella M. Grumbach; Randy H. Kardon; Jui-Kai Wang; Yuyin Zhou; Wei Shao 008 (Comput. Biol. Medicine, 2025)

Scaling Laws in Patchification: An Image Is Worth 50,176 Tokens And More. - Feng Wang 047; Yaodong Yu; Guoyizhe Wei; Wei Shao 008; Yuyin Zhou; Alan L. Yuille; Cihang Xie (CoRR, 2025)

DCFormer: Efficient 3D Vision-Language Modeling with Decomposed Convolutions. - Gorkem Can Ates; Kuang Gong; Wei Shao 008 (CoRR, 2025)

Multi-Class Segmentation of Aortic Branches and Zones in Computed Tomography Angiography: The AortaSeg24 Challenge. - Muhammad Imran 013; Jonathan R. Krebs; Vishal Balaji Sivaraman; Teng Zhang; Amarjeet Kumar; Walker R. Ueland; Michael J. Fassler; Jinlong Huang; Xiao Sun; Lisheng Wang; Pengcheng Shi; Maximilian Rokuss; et al. (CoRR, 2025)

Geodesic Diffusion Models for Medical Image-to-Image Generation. - Teng Zhang; Hongxu Jiang; Kuang Gong; Wei Shao 008 (CoRR, 2025)

Med3DVLM: An Efficient Vision-Language Model for 3D Medical Image Analysis. - Yu Xin; Gorkem Can Ates; Kuang Gong; Wei Shao 008 (CoRR, 2025)

CDPDNet: Integrating Text Guidance with Hybrid Vision Encoders for Medical Image Segmentation. - Jiong Wu; Yang Xing; Boxiao Yu; Wei Shao 008; Kuang Gong (CoRR, 2025)

Prostate Cancer Screening with Artificial Intelligence-Enhanced Micro-Ultrasound: A Comparative Study with Traditional Methods. - Muhammad Imran 013; Wayne G. Brisbane; Li-Ming Su; Jason P. Joseph; Wei Shao 008 (CoRR, 2025)