Nonlinear model reduction for energy metabolism in Saccharomyces cerevisiae. - Ziomara P. Gerdtzen; Prodromos Daoutidis; Wei-Shou Hu (ACC, 2002)

Non-Linear Model Reduction for Metabolic Networks with Multiple Time-Scales. - Ziomara P. Gerdtzen; Prodromos Daoutidis; Wei-Shou Hu (ISIC, 2005)

A Scalable Approach for Discovering Conserved Active Subnetworks across Species. - Raamesh Deshpande; Shikha Sharma; Catherine M. Verfaillie; Wei-Shou Hu; Chad L. Myers (PLoS Comput. Biol., 2010)

Bistability versus Bimodal Distributions in Gene Regulatory Processes from Population Balance. - Che-Chi Shu; Anushree Chatterjee; Gary Dunny; Wei-Shou Hu; Doraiswami Ramkrishna (PLoS Comput. Biol., 2011)

BO4IO: A Bayesian optimization approach to inverse optimization with uncertainty quantification. - Yen-An Lu; Wei-Shou Hu; Joel A. Paulson; Qi Zhang 016 (Comput. Chem. Eng., 2025)