Wei Zhang

Orcid: 0000-0003-3605-9373

Affiliations:
  • University of Central Florida, Department of Computer Science / Genomics and Bioinformatics Cluster, FL, USA
  • University of Minnesota Twin Cities, Computer Science and Engineering Department, MN, USA (former)


According to our database1, Wei Zhang authored at least 24 papers between 2010 and 2023.

Collaborative distances:
  • Dijkstra number2 of four.
  • Erdős number3 of four.

Timeline

Legend:

Book 
In proceedings 
Article 
PhD thesis 
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Links

Online presence:

On csauthors.net:

Bibliography

2023
Aligner-D: Leveraging In-DRAM Computing to Accelerate DNA Short Read Alignment.
IEEE J. Emerg. Sel. Topics Circuits Syst., March, 2023

Incomplete time-series gene expression in integrative study for islet autoimmunity prediction.
Briefings Bioinform., January, 2023

2022
APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data.
BMC Bioinform., 2022

CancerCellTracker: a brightfield time-lapse microscopy framework for cancer drug sensitivity estimation.
Bioinform., 2022

2021
Multi-omics data integration by generative adversarial network.
Bioinform., 2021

In silico model for miRNA-mediated regulatory network in cancer.
Briefings Bioinform., 2021

PIM-Quantifier: A Processing-in-Memory Platform for mRNA Quantification.
Proceedings of the 58th ACM/IEEE Design Automation Conference, 2021

2020
PANDA: Processing-in-MRAM Accelerated De Bruijn Graph based DNA Assembly.
CoRR, 2020

Network-based multi-task learning models for biomarker selection and cancer outcome prediction.
Bioinform., 2020

Platform-integrated mRNA isoform quantification.
Bioinform., 2020

Exploring DNA Alignment-in-Memory Leveraging Emerging SOT-MRAM.
Proceedings of the GLSVLSI '20: Great Lakes Symposium on VLSI 2020, 2020

PIM-Aligner: A Processing-in-MRAM Platform for Biological Sequence Alignment.
Proceedings of the 2020 Design, Automation & Test in Europe Conference & Exhibition, 2020

PIM-Assembler: A Processing-in-Memory Platform for Genome Assembly.
Proceedings of the 57th ACM/IEEE Design Automation Conference, 2020

2019
Learning a Low-Rank Tensor of Pharmacogenomic Multi-relations from Biomedical Networks.
Proceedings of the 2019 IEEE International Conference on Data Mining, 2019

GraphS: A Graph Processing Accelerator Leveraging SOT-MRAM.
Proceedings of the Design, Automation & Test in Europe Conference & Exhibition, 2019

AlignS: A Processing-In-Memory Accelerator for DNA Short Read Alignment Leveraging SOT-MRAM.
Proceedings of the 56th Annual Design Automation Conference 2019, 2019

2017
Low-rank Label Propagation for Semi-supervised Learning with 100 Millions Samples.
CoRR, 2017

2015
Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.
PLoS Comput. Biol., 2015

2014
Network-based Transcript Quantification with RNA-Seq Data.
CoRR, 2014

2013
Network-based Survival Analysis Reveals Subnetwork Signatures for Predicting Outcomes of Ovarian Cancer Treatment.
PLoS Comput. Biol., 2013

2012
Signed network propagation for detecting differential gene expressions and DNA copy number variations.
Proceedings of the ACM International Conference on Bioinformatics, 2012

2011
Inferring Disease and Gene Set Associations with Rank Coherence in Networks
CoRR, 2011

Inferring disease and gene set associations with rank coherence in networks.
Bioinform., 2011

2010
Network propagation models for gene selection.
Proceedings of the 2010 IEEE International Workshop on Genomic Signal Processing and Statistics, 2010


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