Identifying Differentially Expressed Genes in cDNA Microarray Experiments. - Keith A. Baggerly; Kevin R. Coombes; Kenneth R. Hess; David N. Stivers; Lynne V. Abruzzo; Wei Zhang 011 (J. Comput. Biol., 2001)

Probabilistic Boolean networks: a rule-based uncertainty model for gene regulatory networks. - Ilya Shmulevich; Edward R. Dougherty; Seungchan Kim; Wei Zhang 011 (Bioinform., 2002)

ayesian automatic relevance determination algorithms for classifying gene expression data. - Ilya Shmulevich; Edward R. Dougherty; Wei Zhang 011 (Bioinform., 2002)

Binary analysis and optimization-based normalization of gene expression data. - Ilya Shmulevich; Wei Zhang 011 (Bioinform., 2002)

From Boolean to probabilistic Boolean networks as models of genetic regulatory networks. - Ilya Shmulevich; Edward R. Dougherty; Wei Zhang 011 (Proc. IEEE, 2002)

Stability-based cluster analysis applied to microarray data. - Ciprian Doru Giurcaneanu; Ioan Tabus; Ilya Shmulevich; Wei Zhang 011 (ISSPA (2), 2003)

Growing genetic regulatory networks from seed genes. - Ronaldo Fumio Hashimoto; Seungchan Kim; Ilya Shmulevich; Wei Zhang 011; Michael L. Bittner; Edward R. Dougherty (Bioinform., 2004)

Analysis of dose-response effects on gene expression data with comparison of two microarray platforms. - Jianhua Hu; Mini Kapoor; Wei Zhang 011; Stanley R. Hamilton; Kevin R. Coombes (Bioinform., 2005)

Robust estimation of protein expression ratios with lysate microarray technology. - Cristian Mircean; Ilya Shmulevich; David Cogdell; Woonyoung Choi; Yu Jia; Ioan Tabus; Stanley R. Hamilton; Wei Zhang 011 (Bioinform., 2005)

In silico microdissection of microarray data from heterogeneous cell populations. - Harri Lähdesmäki; Ilya Shmulevich; Valerie Dunmire; Olli Yli-Harja; Wei Zhang 011 (BMC Bioinform., 2005)

Robust quantification of in vitro angiogenesis through image analysis. - Antti Niemistö; Valerie Dunmire; Olli Yli-Harja; Wei Zhang 011; Ilya Shmulevich (IEEE Trans. Medical Imaging, 2005)

Nonlinear modeling of protein expressions in protein arrays. - Ioan Tabus; Andrea Hategan; Cristian Mircean; Jorma Rissanen; Ilya Shmulevich; Wei Zhang 011; Jaakko Astola (IEEE Trans. Signal Process., 2006)

Using cell fate attractors to uncover transcriptional regulation of HL60 neutrophil differentiation. - Albert C. Huang; Limei Hu; Stuart A. Kauffman; Wei Zhang 011; Ilya Shmulevich (BMC Syst. Biol., 2009)

Characterization of aberrant pathways across human cancers. - Antti Ylipää; Olli Yli-Harja; Wei Zhang 011; Matti Nykter (BMC Syst. Biol., 2013)