Network propagation models for gene selection. - Wei Zhang 076; Baryun Hwang; Baolin Wu; Rui Kuang (GENSiPS, 2010)

Inferring disease and gene set associations with rank coherence in networks. - TaeHyun Hwang; Wei Zhang 076; Maoqiang Xie; Jinfeng Liu 003; Rui Kuang (Bioinform., 2011)

Inferring Disease and Gene Set Associations with Rank Coherence in Networks - TaeHyun Hwang; Wei Zhang 076; Maoqiang Xie; Rui Kuang (CoRR, 2011)

Signed network propagation for detecting differential gene expressions and DNA copy number variations. - Wei Zhang 076; Nicholas Johnson 001; Baolin Wu; Rui Kuang (BCB, 2012)

Network-based Survival Analysis Reveals Subnetwork Signatures for Predicting Outcomes of Ovarian Cancer Treatment. - Wei Zhang 076; Takayo Ota; Viji Shridhar; Jeremy Chien; Baolin Wu; Rui Kuang (PLoS Comput. Biol., 2013)

Network-based Transcript Quantification with RNA-Seq Data. - Wei Zhang 076; Kay Minn; Lilong Lin; Baolin Wu; Jeremy Chien; Hui Zheng; Rui Kuang (CoRR, 2014)

Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis. - Wei Zhang 076; Jae-Woong Chang; Lilong Lin; Kay Minn; Baolin Wu; Jeremy Chien; Jeongsik Yong; Hui Zheng; Rui Kuang (PLoS Comput. Biol., 2015)

Low-rank Label Propagation for Semi-supervised Learning with 100 Millions Samples. - Raphael Petegrosso; Wei Zhang 076; Zhuliu Li; Yousef Saad; Rui Kuang (CoRR, 2017)

AlignS: A Processing-In-Memory Accelerator for DNA Short Read Alignment Leveraging SOT-MRAM. - Shaahin Angizi; Jiao Sun; Wei Zhang 076; Deliang Fan (DAC, 2019)

GraphS: A Graph Processing Accelerator Leveraging SOT-MRAM. - Shaahin Angizi; Jiao Sun; Wei Zhang 076; Deliang Fan (DATE, 2019)

Learning a Low-Rank Tensor of Pharmacogenomic Multi-relations from Biomedical Networks. - Zhuliu Li; Wei Zhang 076; Rong Stephanie Huang; Rui Kuang (ICDM, 2019)

PIM-Assembler: A Processing-in-Memory Platform for Genome Assembly. - Shaahin Angizi; Naima Ahmed Fahmi; Wei Zhang 076; Deliang Fan (DAC, 2020)

PIM-Aligner: A Processing-in-MRAM Platform for Biological Sequence Alignment. - Shaahin Angizi; Jiao Sun; Wei Zhang 076; Deliang Fan (DATE, 2020)

Exploring DNA Alignment-in-Memory Leveraging Emerging SOT-MRAM. - Shaahin Angizi; Wei Zhang 076; Deliang Fan (ACM Great Lakes Symposium on VLSI, 2020)

Platform-integrated mRNA isoform quantification. - Jiao Sun; Jae-Woong Chang; Teng Zhang 002; Jeongsik Yong; Rui Kuang; Wei Zhang 076 (Bioinform., 2020)

Network-based multi-task learning models for biomarker selection and cancer outcome prediction. - Zhibo Wang; Zhezhi He; Milan Shah; Teng Zhang 002; Deliang Fan; Wei Zhang 076 (Bioinform., 2020)

PANDA: Processing-in-MRAM Accelerated De Bruijn Graph based DNA Assembly. - Shaahin Angizi; Naima Ahmed Fahmi; Wei Zhang 076; Deliang Fan (CoRR, 2020)

PIM-Quantifier: A Processing-in-Memory Platform for mRNA Quantification. - Fan Zhang 069; Shaahin Angizi; Naima Ahmed Fahmi; Wei Zhang 076; Deliang Fan (DAC, 2021)

Multi-Armed Bandit Based Feature Selection. - Kunpeng Liu 001; Haibo Huang; Wei Zhang 076; Ahmad Hariri; Yanjie Fu; Kien A. Hua (SDM, 2021)

In silico model for miRNA-mediated regulatory network in cancer. - Khandakar Tanvir Ahmed; Jiao Sun; William Chen; Irene Martinez; Sze Cheng; Wencai Zhang; Jeongsik Yong; Wei Zhang 076 (Briefings Bioinform., 2021)

Multi-omics data integration by generative adversarial network. - Khandakar Tanvir Ahmed; Jiao Sun; Sze Cheng; Jeongsik Yong; Wei Zhang 076 (Bioinform., 2021)

CancerCellTracker: a brightfield time-lapse microscopy framework for cancer drug sensitivity estimation. - Qibing Jiang; Praneeth Sudalagunta; Maria C. Silva; Rafael R. Canevarolo; Xiaohong Zhao; Khandakar Tanvir Ahmed; Raghunandan Reddy Alugubelli; Gabriel Deavila; Alexandre Tungesvik; Lia Perez; Robert A. Gatenby; Robert J. Gillies; et al. (Bioinform., 2022)

APA-Scan: detection and visualization of 3′-UTR alternative polyadenylation with RNA-seq and 3′-end-seq data. - Naima Ahmed Fahmi; Khandakar Tanvir Ahmed; Jae-Woong Chang; Heba Nassereddeen; Deliang Fan; Jeongsik Yong; Wei Zhang 076 (BMC Bioinform., 2022)

Attention-Based Multi-modal Missing Value Imputation for Time Series Data with High Missing Rate. - Khandakar Tanvir Ahmed; Sudipto Baul; Yanjie Fu; Wei Zhang 076 (SDM, 2023)

Feature Cognition Enhancement via Interaction-Aware Automated Transformation. - Ehtesamul Azim; Dongjie Wang; Kunpeng Liu 001; Wei Zhang 076; Yanjie Fu (CoRR, 2023)

Incomplete time-series gene expression in integrative study for islet autoimmunity prediction. - Khandakar Tanvir Ahmed; Sze Cheng; Qian Li 023; Jeongsik Yong; Wei Zhang 076 (Briefings Bioinform., 2023)

Aligner-D: Leveraging In-DRAM Computing to Accelerate DNA Short Read Alignment. - Fan Zhang 069; Shaahin Angizi; Jiao Sun; Wei Zhang 076; Deliang Fan (IEEE J. Emerg. Sel. Topics Circuits Syst., 2023)

Feature Interaction Aware Automated Data Representation Transformation. - Ehtesamul Azim; Dongjie Wang; Kunpeng Liu 001; Wei Zhang 076; Yanjie Fu (SDM, 2024)

Integrating spatial transcriptomics and bulk RNA-seq: predicting gene expression with enhanced resolution through graph attention networks. - Sudipto Baul; Khandakar Tanvir Ahmed; Qibing Jiang; Guangyu Wang; Qian Li 023; Jeongsik Yong; Wei Zhang 076 (Briefings Bioinform., 2024)

A 65-nm RRAM Compute-in-Memory Macro for Genome Processing. - Fan Zhang 069; Amitesh Sridharan; Wangxin He; Injune Yeo; Maximilian Liehr; Wei Zhang 076; Nathaniel C. Cady; Yu Cao 001; Jae-Sun Seo; Deliang Fan (IEEE J. Solid State Circuits, 2024)

Biological Pathway Guided Gene Selection Through Collaborative Reinforcement Learning. - Ehtesamul Azim; Dongjie Wang; Tae Hyun Hwang; Yanjie Fu; Wei Zhang 076 (CoRR, 2025)