MolXPT: Wrapping Molecules with Text for Generative Pre-training. - Zequn Liu; Wei Zhang 399; Yingce Xia; Lijun Wu 003; Shufang Xie 003; Tao Qin 001; Ming Zhang 004; Tie-Yan Liu (ACL (2), 2023)

BioT5: Enriching Cross-modal Integration in Biology with Chemical Knowledge and Natural Language Associations. - Qizhi Pei; Wei Zhang 399; Jinhua Zhu 001; Kehan Wu; Kaiyuan Gao; Lijun Wu 003; Yingce Xia; Rui Yan 001 (EMNLP, 2023)

Examining User-Friendly and Open-Sourced Large GPT Models: A Survey on Language, Multimodal, and Scientific GPT Models. - Kaiyuan Gao; Sunan He; Zhenyu He 012; Jiacheng Lin; Qizhi Pei; Jie Shao; Wei Zhang 399 (CoRR, 2023)

NatureLM: Deciphering the Language of Nature for Scientific Discovery. - Yingce Xia; Peiran Jin; Shufang Xie 003; Liang He 010; Chuan Cao; Renqian Luo; Guoqing Liu; Yue Wang 017; Zequn Liu; Yuan-Jyue Chen; Zekun Guo; Yeqi Bai; et al. (CoRR, 2025)

MolChord: Structure-Sequence Alignment for Protein-Guided Drug Design. - Wei Zhang 399; Zekun Guo; Yingce Xia; Peiran Jin; Shufang Xie 003; Tao Qin 001; Xiang-Yang Li (CoRR, 2025)

Evidence-aware Integration and Domain Identification of Spatial Transcriptomics Data. - Wei Zhang 399; Siyu Yi; Lezhi Chen; Yifan Wang 014; Ziyue Qiao; Yongdao Zhou; Wei Ju 001 (AAAI, 2026)

Identifying and Correcting Label Noise for Robust GNNs via Influence Contradiction. - Wei Ju 001; Wei Zhang 399; Siyu Yi; Zhengyang Mao; Yifan Wang 014; Jingyang Yuan; Zhiping Xiao 001; Ziyue Qiao; Ming Zhang 004 (CoRR, 2026)

Deciphering Scientific Reasoning Steps from Outcome Data for Molecule Optimization. - Zequn Liu; Kehan Wu; Shufang Xie 003; Zekun Guo; Wei Zhang 399; Tao Qin 001; Renhe Liu; Yingce Xia (CoRR, 2026)