Rotated Wedge Averaging Method for Junction Classification. - Weichuan Yu; Konstantinos Daniilidis; Gerald Sommer (CVPR, 1998)

Junction Characterization Using Polar Pyramid. - Weichuan Yu; Konstantinos Daniilidis; Gerald Sommer (DAGM-Symposium, 1998)

Low-Cost Junction Characterization using Polar Averaging Filters. - Weichuan Yu; Konstantinos Daniilidis; Gerald Sommer (ICIP (3), 1998)

Detection and Characterization of Multiple Motion Points. - Weichuan Yu; Gerald Sommer; Steven S. Beauchemin; Konstantinos Daniilidis (CVPR, 1999)

A New 3D Orientation Steerable Filter. - Weichuan Yu; Konstantinos Daniilidis; Gerald Sommer (DAGM-Symposium, 2000)

Eliminating Outliers in Motion Occlusion Analysis. - Weichuan Yu; Konstantinos Daniilidis; Gerald Sommer (DAGM-Symposium, 2000)

Local orientation analysis in images and image sequences using steerable filters. - Weichuan Yu (Shaker, 2000)

3D-Orientation Signatures with Conic Kernel Filtering for Multiple Motion Analysis. - Weichuan Yu; Gerald Sommer; Kostas Daniilidis (CVPR (1), 2001)

Skewness of Gabor Wavelets and Source Signal Separation. - Weichuan Yu; Gerald Sommer; Konstantinos Daniilidis (WAA, 2001)

Approximate orientation steerability based on angular Gaussians. - Weichuan Yu; Konstantinos Daniilidis; Gerald Sommer (IEEE Trans. Image Process., 2001)

Oriented Structure of the Occlusion Distortion: Is It Reliable? - Weichuan Yu; Gerald Sommer; Steven S. Beauchemin; Konstantinos Daniilidis (IEEE Trans. Pattern Anal. Mach. Intell., 2002)

Motion Analysis of 3D Ultrasound Texture Patterns. - Weichuan Yu; Ning Lin; Ping Yan; Kailasnath Purushothaman; Albert J. Sinusas; Karl Thiele; James S. Duncan (FIMH, 2003)

Multiple motion analysis: in spatial or in spectral domain? - Weichuan Yu; Gerald Sommer; Kostas Daniilidis (Comput. Vis. Image Underst., 2003)

Three dimensional orientation signatures with conic kernel filtering for multiple motion analysis. - Weichuan Yu; Gerald Sommer; Kostas Daniilidis (Image Vis. Comput., 2003)

Combinative multi-scale level set framework for echocardiographic image segmentation. - Ning Lin; Weichuan Yu; James S. Duncan (Medical Image Anal., 2003)

Using Skew Gabor Filter in Source Signal Separation and Local Spectral Multi-Orientation Analysis. - Weichuan Yu; Gerald Sommer; Kostas Daniilidis (CVPR (1), 2004)

Pointwise Motion Tracking in Echocardiographic Images. - Weichuan Yu; Ping Yan; Albert J. Sinusas; Karl Thiele; James S. Duncan (CVPR (1), 2004)

The Choice of Tracking Feature In Ultrasound-Based Strain Imaging Analysis. - Weichuan Yu; James S. Duncan (ISBI, 2004)

Aligning Peaks Across Multiple Mass Spectrometry Data Sets Using A Scale-Space Based Approach. - Weichuan Yu; Xiaoye Li; Hongyu Zhao 003 (CSB Workshops, 2005)

Using skew Gabor filter in source signal separation and local spectral orientation analysis. - Weichuan Yu; Gerald Sommer; Konstantinos Daniilidis; James S. Duncan (Image Vis. Comput., 2005)

Detecting and aligning peaks in mass spectrometry data with applications to MALDI. - Weichuan Yu; Baolin Wu; Ning Lin; Kathy Stone; Kenneth R. Williams; Hongyu Zhao 003 (Comput. Biol. Chem., 2006)

Towards pointwise motion tracking in echocardiographic image sequences - Comparing the reliability of different features for speckle tracking. - Weichuan Yu; Ping Yan; Albert J. Sinusas; Karl Thiele; James S. Duncan (Medical Image Anal., 2006)

Multiple Peak Alignment in Sequential Data Analysis: A Scale-Space-Based Approach. - Weichuan Yu; Xiaoye Li; Junfeng Liu; Baolin Wu; Kenneth R. Williams; Hongyu Zhao 003 (IEEE ACM Trans. Comput. Biol. Bioinform., 2006)

A new protocol of analyzing isotope-coded affinity tag data from high-resolution LC-MS spectrometry. - Weichuan Yu; Junfeng Liu; Chris Colangelo; Erol E. Gulcicek; Hongyu Zhao 003 (Comput. Biol. Chem., 2007)

Peak bagging for peptide mass fingerprinting. - Zengyou He; Can Yang 002; Weichuan Yu (Bioinform., 2008)

Is Subcellular Localization Informative for Modeling Protein-Protein Interaction Signal? - Junfeng Liu; Hongyu Zhao 003; Jun Tan; Dajie Luo; Weichuan Yu; E. James Harner; Weichung Joe Shih (J. Electr. Comput. Eng., 2008)

Improving peptide identification with single-stage mass spectrum peaks. - Zengyou He; Weichuan Yu (Bioinform., 2009)

SNPHarvester: a filtering-based approach for detecting epistatic interactions in genome-wide association studies. - Can Yang 002; Zengyou He; Xiang Wan; Qiang Yang 001; Hong Xue 001; Weichuan Yu (Bioinform., 2009)

MegaSNPHunter: a learning approach to detect disease predisposition SNPs and high level interactions in genome wide association study. - Xiang Wan; Can Yang 002; Qiang Yang 001; Hong Xue 001; Nelson L. S. Tang; Weichuan Yu (BMC Bioinform., 2009)

Semi-supervised protein subcellular localization. - Qian Xu 005; Derek Hao Hu; Hong Xue 001; Weichuan Yu; Qiang Yang 001 (BMC Bioinform., 2009)

Comparison of public peak detection algorithms for MALDI mass spectrometry data analysis. - Chao Yang; Zengyou He; Weichuan Yu (BMC Bioinform., 2009)

SyncPro : A synchronized visualization tool for differential analysis of proteomics data sets. - Ling Sing Yung; Chao Yang; Mohammed Dakna; Harald Mischak; Weichuan Yu (BIBM Workshops, 2010)

A coupled filtering method to solve feature-motion decorrelation in speckle tracking. - Tianzhu Liang; Weichuan Yu (ISBI, 2010)

Accurate segmentation of ultrasound images using the motion cue. - Xiaowei Zhou 001; Tianzhu Liang; Weichuan Yu (ISBI, 2010)

Predictive rule inference for epistatic interaction detection in genome-wide association studies. - Xiang Wan; Can Yang 002; Qiang Yang 001; Hong Xue 001; Nelson L. S. Tang; Weichuan Yu (Bioinform., 2010)

Detecting two-locus associations allowing for interactions in genome-wide association studies. - Xiang Wan; Can Yang 002; Qiang Yang 001; Hong Xue 001; Nelson L. S. Tang; Weichuan Yu (Bioinform., 2010)

Identifying main effects and epistatic interactions from large-scale SNP data via adaptive group Lasso. - Can Yang 002; Xiang Wan; Qiang Yang 001; Hong Xue 001; Weichuan Yu (BMC Bioinform., 2010)

Stable feature selection for biomarker discovery. - Zengyou He; Weichuan Yu (Comput. Biol. Chem., 2010)

BOOST: A fast approach to detecting gene-gene interactions in genome-wide case-control studies - Xiang Wan; Can Yang 002; Qiang Yang 001; Hong Xue 001; Xiaodan Fan; Nelson L. S. Tang; Weichuan Yu (CoRR, 2010)

Optimization-Based Peptide Mass Fingerprinting for Protein Mixture Identification. - Zengyou He; Chao Yang; Can Yang 002; Robert Z. Qi; Jason Po-Ming Tam; Weichuan Yu (J. Comput. Biol., 2010)

A brief review of signal processing issues in mass spectrometry-based proteomics studies. - Chao Yang; Weichuan Yu (ACSCC, 2011)

Identifying disease-associated SNP clusters via contiguous outlier detection. - Can Yang 002; Xiaowei Zhou 001; Xiang Wan; Qiang Yang 001; Hong Xue 001; Weichuan Yu (Bioinform., 2011)

GBOOST: a GPU-based tool for detecting gene-gene interactions in genome-wide case control studies. - Ling Sing Yung; Can Yang 002; Xiang Wan; Weichuan Yu (Bioinform., 2011)

Motif-All: discovering all phosphorylation motifs. - Zengyou He; Can Yang 002; Guangyu Guo; Ning Li; Weichuan Yu (BMC Bioinform., 2011)

Score regularization for peptide identification. - Zengyou He; Hongyu Zhao 003; Weichuan Yu (BMC Bioinform., 2011)

The choice of null distributions for detecting gene-gene interactions in genome-wide association studies. - Can Yang 002; Xiang Wan; Zengyou He; Qiang Yang 001; Hong Xue 001; Weichuan Yu (BMC Bioinform., 2011)

A hidden two-locus disease association pattern in genome-wide association studies. - Can Yang 002; Xiang Wan; Qiang Yang 001; Hong Xue 001; Nelson L. S. Tang; Weichuan Yu (BMC Bioinform., 2011)

A Partial Set Covering Model for Protein Mixture Identification Using Mass Spectrometry Data. - Zengyou He; Can Yang 002; Weichuan Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2011)

Automatic mitral leaflet tracking in echocardiography by outlier detection in the low-rank representation. - Xiaowei Zhou 001; Can Yang 002; Weichuan Yu (CVPR, 2012)

Protein inference: a review. - Ting Huang; Jingjing Wang; Weichuan Yu; Zengyou He (Briefings Bioinform., 2012)

Comments on 'An empirical comparison of several recent epistatic interaction detection methods'. - Xiang Wan; Can Yang 002; Weichuan Yu (Bioinform., 2012)

Guest Editors' Introduction to the Special Issue on "New Trends in Signal Processing and Biomedical Engineering". - Weichuan Yu; Zheng-Hua Tan; Yi Wan (Comput. Electr. Eng., 2012)

Peptide Reranking with Protein-Peptide Correspondence and Precursor Peak Intensity Information. - Chao Yang; Zengyou He; Can Yang 002; Weichuan Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2012)

Active Contours with Group Similarity. - Xiaowei Zhou 001; Xiaojie Huang; James S. Duncan; Weichuan Yu (CVPR, 2013)

Moving Object Detection by Detecting Contiguous Outliers in the Low-Rank Representation. - Xiaowei Zhou 001; Can Yang 002; Weichuan Yu (IEEE Trans. Pattern Anal. Mach. Intell., 2013)

HapBoost: A Fast Approach to Boosting Haplotype Association Analyses in Genome-Wide Association Studies. - Xiang Wan; Can Yang 002; Qiang Yang 001; Hongyu Zhao 003; Weichuan Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

A Combinatorial Perspective of the Protein Inference Problem. - Chao Yang; Zengyou He; Weichuan Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

Multisample aCGH Data Analysis via Total Variation and Spectral Regularization. - Xiaowei Zhou 001; Can Yang 002; Xiang Wan; Hongyu Zhao 003; Weichuan Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2013)

On Feature Motion Decorrelation in Ultrasound Speckle Tracking. - Tianzhu Liang; Ling Sing Yung; Weichuan Yu (IEEE Trans. Medical Imaging, 2013)

Piecewise-constant and low-rank approximation for identification of recurrent copy number variations. - Xiaowei Zhou 001; Jiming Liu 001; Xiang Wan; Weichuan Yu (Bioinform., 2014)

Low-Rank Modeling and Its Applications in Image Analysis. - Xiaowei Zhou 001; Can Yang 002; Hongyu Zhao 003; Weichuan Yu (ACM Comput. Surv., 2014)

PBOOST: a GPU-based tool for parallel permutation tests in genome-wide association studies. - Guangyuan Yang; Wei Jiang 019; Qiang Yang 001; Weichuan Yu (Bioinform., 2015)

GBOOST 2.0: A GPU-based tool for detecting gene-gene interactions with covariates adjustment in genome-wide association studies. - Meng Wang; Wei Jiang 019; Ronald Ching Wan Ma; Weichuan Yu (BIBM, 2016)

FPGA implementation of the coupled filtering method. - Chen Zhang; Tianzhu Liang; Philip K. T. Mok; Weichuan Yu (BIBM, 2016)

ECL: an exhaustive search tool for the identification of cross-linked peptides using whole database. - Fengchao Yu; Ning Li; Weichuan Yu (BMC Bioinform., 2016)

Power estimation and sample size determination for replication studies of genome-wide association studies. - Wei Jiang 019; Weichuan Yu (BMC Genom., 2016)

Erratum to "On Feature Motion Decorrelation in Ultrasound Speckle Tracking". - Tianzhu Liang; Ling Sing Yung; Weichuan Yu (IEEE Trans. Medical Imaging, 2016)

What is the probability of replicating a statistically significant association in genome-wide association studies? - Wei Jiang 019; Jing-Hao Xue; Weichuan Yu (Briefings Bioinform., 2017)

Controlling the joint local false discovery rate is more powerful than meta-analysis methods in joint analysis of summary statistics from multiple genome-wide association studies. - Wei Jiang 019; Weichuan Yu (Bioinform., 2017)

A network approach to exploring the functional basis of gene-gene epistatic interactions in disease susceptibility. - Danny Kit-Sang Yip; Landon L. Chan; Iris K. Pang; Wei Jiang 019; Nelson L. S. Tang; Weichuan Yu; Kevin Y. Yip (Bioinform., 2018)

Xolik: finding cross-linked peptides with maximum paired scores in linear time. - Jiaan Dai; Wei Jiang 019; Fengchao Yu; Weichuan Yu (Bioinform., 2019)

Data imbalance in CRISPR off-target prediction. - Yuli Gao; Guohui Chuai; Weichuan Yu; Shen Qu; Qi Liu 019 (Briefings Bioinform., 2020)

Understanding the Limit of Open Search in the Identification of Peptides With Post-translational Modifications - A Simulation-Based Study. - Jiaan Dai; Fengchao Yu; Chen Zhou 004; Weichuan Yu (IEEE ACM Trans. Comput. Biol. Bioinform., 2021)

Combining Tags of Various Lengths Benefits Peptide Identification in Bottom-up Proteomics. - Shengzhi Lai; Ning Li; Weichuan Yu (BIBM, 2023)

Automatic 3D joint erosion detection for the diagnosis and monitoring of rheumatoid arthritis using hand HR-pQCT images. - Xuechen Zhang 003; Isaac Cheng; Shaojun Liu; Chenrui Li; Jing-Hao Xue; Lai-Shan Tam; Weichuan Yu (Comput. Medical Imaging Graph., 2023)

ECL 3.0: a sensitive peptide identification tool for cross-linking mass spectrometry data analysis. - Chen Zhou 004; Shuaijian Dai; Shengzhi Lai; Yuanqiao Lin; Xuechen Zhang 002; Ning Li; Weichuan Yu (BMC Bioinform., 2023)

A Mixed Integer Linear Program for Post-translational Modification Characterization. - Shengzhi Lai; Peize Zhao; Ning Li; Weichuan Yu (BIBM, 2024)

DCES-PA: Deformation-controllable elastic shape model for 3D bone proliferation analysis using hand HR-pQCT images. - Xuechen Zhang 003; Isaac Cheng; Yingzhao Jin; Jiandong Shi; Chenrui Li; Jing-Hao Xue; Lai-Shan Tam; Weichuan Yu (Comput. Biol. Medicine, 2024)

Using the coefficient of determination to identify injury regions after stroke in pre-clinical FDG-PET images. - Wuxian He; Hongtu Tang; Jia Li; Xiaoyan Shen; Xuechen Zhang 003; Chenrui Li; Huafeng Liu; Weichuan Yu (Comput. Biol. Medicine, 2025)

Time-series atlases of the rat brain after middle cerebral artery occlusion using FDG-PET images. - Chenrui Li; Wuxian He; Xuechen Zhang 003; Hongtu Tang; Jia Li; Xiaoyan Shen; Huafeng Liu; Weichuan Yu (Comput. Biol. Medicine, 2025)