GCLink: a graph contrastive link prediction framework for gene regulatory network inference. - Weiming Yu; Zerun Lin; Miaofang Lan; Le Ou-Yang (Bioinform., 2025)

LineGRN: A Line Graph Neural Network for Gene Regulatory Network Inference. - Ziwei Wang; Ge Xu; Weiming Yu; Le Ou-Yang (IEEE J. Biomed. Health Informatics, 2026)

TransGRN: A Transfer Learning-Based Framework for Inferring Gene Regulatory Networks Across Cell Lines. - Ge Xu; Ziwei Wang; Jiahao Zhou; Weiming Yu; Le Ou-Yang (IEEE J. Biomed. Health Informatics, 2026)