Biomedical Entity Recognition by Detection and Matching. - Junyi Bian; Rongze Jiang; Weiqi Zhai; Tianyang Huang; Hong Zhou; Shanfeng Zhu (CoRR, 2023)

Phen2Disease: a phenotype-driven model for disease and gene prioritization by bidirectional maximum matching semantic similarities. - Weiqi Zhai; Xiaodi Huang; Nan Shen; Shanfeng Zhu (Briefings Bioinform., 2023)

DMNER: Biomedical Named Entity Recognition by Detection and Matching. - Junyi Bian; Rongze Jiang; Weiqi Zhai; Tianyang Huang; Xiaodi Huang; Hong Zhou; Shanfeng Zhu (BIBM, 2024)

VANER: Leveraging Large Language Model for Versatile and Adaptive Biomedical Named Entity Recognition. - Junyi Bian; Weiqi Zhai; Xiaodi Huang; Jiaxuan Zheng; Shanfeng Zhu (ECAI, 2024)

DualGOFiller: A Dual-Channel Graph Neural Network with Contrastive Learning for Enhancing Function Prediction in Partially Annotated Proteins. - Shaojun Wang; Hancheng Liu; Weiqi Zhai; Shanfeng Zhu (RECOMB, 2025)