TOD-CUP: a gene expression rank-based majority vote algorithm for tissue origin diagnosis of cancers of unknown primary. - Yifei Shen; Qinjie Chu; Xinxin Yin; Yinjun He; Panpan Bai; Yunfei Wang; Weijia Fang; Michael P. Timko; Longjiang Fan; Weiqin Jiang (Briefings Bioinform., 2021)

mKmer: an unbiased K-mer embedding of microbiomic single-microbe RNA sequencing data. - Fangyu Mo; Qinghong Qian; Xiaolin Lu; Dihuai Zheng; Wenjie Cai; Jie Yao; Hongyu Chen; Yujie Huang; Xiang Zhang; Sanling Wu; Yifei Shen; Yinqi Bai; et al. (Briefings Bioinform., 2025)