QuasiSeq: profiling viral quasispecies via self-tuning spectral clustering with PacBio long sequencing reads. - Xiaoli Jiao; Hiromi Imamichi; Brad T. Sherman; Rishub Nahar; Robin L. Dewar; H. Clifford Lane; Tomozumi Imamichi; Weizhong Chang (Bioinform., 2022)

DAVID: a web server for functional enrichment analysis and functional annotation of gene lists (2021 update). - Brad T. Sherman; Ming Hao; Ju Qiu; Xiaoli Jiao; Michael W. Baseler; H. Clifford Lane; Tomozumi Imamichi; Weizhong Chang (Nucleic Acids Res., 2022)

HIVGenoPipe: a nextflow pipeline for the detection of HIV-1 drug resistance using a real-time sample-specific reference sequence. - Thoai Dotrang; Brad T. Sherman; Lisheng Dai; Muhammad Ayub Khan; Helene C. Highbarger; Whitney Bruchey; Sylvain Laverdure; Michael W. Baseler; Tomozumi Imamichi; Robin L. Dewar; Weizhong Chang (BMC Bioinform., 2025)