Saturated BLAST: an automated multiple intermediate sequence search used to detect distant homology. - Weizhong Li 002; Frederic Pio; Krzysztof Pawlowski; Adam Godzik (Bioinform., 2000)

Clustering of highly homologous sequences to reduce the size of large protein databases. - Weizhong Li 002; Lukasz Jaroszewski; Adam Godzik (Bioinform., 2001)

Tolerating some redundancy significantly speeds up clustering of large protein databases. - Weizhong Li 002; Lukasz Jaroszewski; Adam Godzik (Bioinform., 2002)

A segment alignment approach to protein comparison. - Yuzhen Ye; Lukasz Jaroszewski; Weizhong Li 002; Adam Godzik (Bioinform., 2003)

FFAS03: a server for profile-profile sequence alignments. - Lukasz Jaroszewski; Leszek Rychlewski; Zhanwen Li; Weizhong Li 002; Adam Godzik (Nucleic Acids Res., 2005)

VISSA: a program to visualize structural features from structure sequence alignment. - Weizhong Li 002; Adam Godzik (Bioinform., 2006)

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences. - Weizhong Li 002; Adam Godzik (Bioinform., 2006)

A Fast Clustering Algorithm for Analyzing Highly Similar Compounds of Very Large Libraries. - Weizhong Li 002 (J. Chem. Inf. Model., 2006)

Gene identification and protein classification in microbial metagenomic sequence data via incremental clustering. - Shibu Yooseph; Weizhong Li 002; Granger G. Sutton (BMC Bioinform., 2008)

Identification of ribosomal RNA genes in metagenomic fragments. - Ying Huang; Paul Gilna; Weizhong Li 002 (Bioinform., 2009)

Analysis and comparison of very large metagenomes with fast clustering and functional annotation. - Weizhong Li 002 (BMC Bioinform., 2009)

CAMERA 2.0: A Data-centric Metagenomics Community Infrastructure Driven by Scientific Workflows. - Ilkay Altintas; Abel W. Lin; Jing Chen; Chris Churas; Madhusudan Gujral; Shulei Sun; Weizhong Li 002; Ramil Manansala; Mayya Sedova; Jeffrey S. Grethe; Mark H. Ellisman (SERVICES, 2010)

CD-HIT Suite: a web server for clustering and comparing biological sequences. - Ying Huang; Beifang Niu; Ying Gao; Limin Fu; Weizhong Li 002 (Bioinform., 2010)

Artificial and natural duplicates in pyrosequencing reads of metagenomic data. - Beifang Niu; Limin Fu; Shulei Sun; Weizhong Li 002 (BMC Bioinform., 2010)

Expansion of the Protein Repertoire in Newly Explored Environments: Human Gut Microbiome Specific Protein Families. - Kyle Ellrott; Lukasz Jaroszewski; Weizhong Li 002; John C. Wooley; Adam Godzik (PLoS Comput. Biol., 2010)

FR-HIT, a very fast program to recruit metagenomic reads to homologous reference genomes. - Beifang Niu; Zhengwei Zhu 001; Limin Fu; Sitao Wu; Weizhong Li 002 (Bioinform., 2011)

Community cyberinfrastructure for Advanced Microbial Ecology Research and Analysis: the CAMERA resource. - Shulei Sun; Jing Chen; Weizhong Li 002; Ilkay Altintas; Abel W. Lin; Steven Peltier; Karen I. Stocks; Eric E. Allen; Mark H. Ellisman; Jeffrey S. Grethe; John C. Wooley (Nucleic Acids Res., 2011)

Challenges and approaches for distributed workflow-driven analysis of large-scale biological data: vision paper. - Ilkay Altintas; Jianwu Wang 001; Daniel Crawl; Weizhong Li 002 (EDBT/ICDT Workshops, 2012)

Ultrafast clustering algorithms for metagenomic sequence analysis. - Weizhong Li 002; Limin Fu; Beifang Niu; Sitao Wu; John C. Wooley (Briefings Bioinform., 2012)

CD-HIT: accelerated for clustering the next-generation sequencing data. - Limin Fu; Beifang Niu; Zhengwei Zhu 001; Sitao Wu; Weizhong Li 002 (Bioinform., 2012)

MGAviewer: a desktop visualization tool for analysis of metagenomics alignment data. - Zhengwei Zhu 001; Beifang Niu; Jing Chen; Sitao Wu; Shulei Sun; Weizhong Li 002 (Bioinform., 2013)

Big Data Applications Using Workflows for Data Parallel Computing. - Jianwu Wang 001; Daniel Crawl; Ilkay Altintas; Weizhong Li 002 (Comput. Sci. Eng., 2014)

DGCF: A Distributed Greedy Clustering Framework for Large-scale Genomic Sequences. - Zekun Yin; Xiaoming Xu; Kaichao Fan; Ruilin Li; Weizhong Li 002; Weiguo Liu; Beifang Niu (BIBM, 2019)

Gclust: A Parallel Clustering Tool for Microbial Genomic Data. - Ruilin Li; Xiaoyu He; Chuangchuang Dai; Haidong Zhu; Xianyu Lang; Wei Chen 033; Xiaodong Li; Dan Zhao; Yu Zhang 130; Xinyin Han; Tie Niu; Yi Zhao; et al. (Genom. Proteom. Bioinform., 2019)