miRExpress: Analyzing high-throughput sequencing data for profiling microRNA expression. - Wei-Chi Wang; Feng-Mao Lin; Wen-Chi Chang; Kuan-Yu Lin; Hsien-Da Huang; Na-Sheng Lin (BMC Bioinform., 2009)

Incorporating support vector machine for identifying protein tyrosine sulfation sites. - Wen-Chi Chang; Tzong-Yi Lee; Dray-Ming Shien; Justin Bo-Kai Hsu; Jorng-Tzong Horng; Po-Chiang Hsu; Ting-Yuan Wang; Hsien-Da Huang; Rong-Long Pan (J. Comput. Chem., 2009)

Incorporating structural characteristics for identification of protein methylation sites. - Dray-Ming Shien; Tzong-Yi Lee; Wen-Chi Chang; Justin Bo-Kai Hsu; Jorng-Tzong Horng; Po-Chiang Hsu; Ting-Yuan Wang; Hsien-Da Huang (J. Comput. Chem., 2009)

FMM: a web server for metabolic pathway reconstruction and comparative analysis. - Chih-Hung Chou; Wen-Chi Chang; Chih-Min Chiu; Chih-Chang Huang; Hsien-Da Huang (Nucleic Acids Res., 2009)

N-Ace: Using solvent accessibility and physicochemical properties to identify protein N-acetylation sites. - Tzong-Yi Lee; Justin Bo-Kai Hsu; Feng-Mao Lin; Wen-Chi Chang; Po-Chiang Hsu; Hsien-Da Huang (J. Comput. Chem., 2010)

RegPhos: a system to explore the protein kinase-substrate phosphorylation network in humans. - Tzong-Yi Lee; Justin Bo-Kai Hsu; Wen-Chi Chang; Hsien-Da Huang (Nucleic Acids Res., 2011)

GPMiner: an integrated system for mining combinatorial cis-regulatory elements in mammalian gene group. - Tzong-Yi Lee; Wen-Chi Chang; Justin Bo-Kai Hsu; Tzu-Hao Chang; Dray-Ming Shien (BMC Genom., 2012)

Geometric Integration of Heterogeneous Models for Multisatellite Image Positioning. - Liang-Chien Chen; Wen-Chi Chang; Tee-Ann Teo (IEEE Trans. Geosci. Remote. Sens., 2012)

dbPTM 3.0: an informative resource for investigating substrate site specificity and functional association of protein post-translational modifications. - Cheng-Tsung Lu; Kai-Yao Huang; Min-Gang Su; Tzong-Yi Lee; Neil Arvin Bretaña; Wen-Chi Chang; Yi-Ju Chen; Yu-Ju Chen; Hsien-Da Huang (Nucleic Acids Res., 2013)

AtmiRNET: a web-based resource for reconstructing regulatory networks of Arabidopsis microRNAs. - Chia-Hung Chien; Yi-Fan Chiang-Hsieh; Yi-An Chen; Chi-Nga Chow; Nai-Yun Wu; Ping-Fu Hou; Wen-Chi Chang (Database J. Biol. Databases Curation, 2015)

EXPath: a database of comparative expression analysis inferring metabolic pathways for plants. - Chia-Hung Chien; Chi-Nga Chow; Nai-Yun Wu; Yi-Fan Chiang-Hsieh; Ping-Fu Hou; Wen-Chi Chang (BMC Genom., 2015)

PlantPAN 2.0: an update of plant promoter analysis navigator for reconstructing transcriptional regulatory networks in plants. - Chi-Nga Chow; Han-Qin Zheng; Nai-Yun Wu; Chia-Hung Chien; Hsien-Da Huang; Tzong-Yi Lee; Yi-Fan Chiang-Hsieh; Ping-Fu Hou; Tien-Yi Yang; Wen-Chi Chang (Nucleic Acids Res., 2016)

High capacity reversible data hiding scheme for encrypted images. - Thai Son Nguyen; Chin-Chen Chang 001; Wen-Chi Chang (Signal Process. Image Commun., 2016)

microRPM: a microRNA prediction model based only on plant small RNA sequencing data. - Kuan-Chieh Tseng; Yi-Fan Chiang-Hsieh; Hsuan Pai; Chi-Nga Chow; Shu-Chuan Lee; Han-Qin Zheng; Po-Li Kuo; Guan-Zhen Li; Yu-Cheng Hung; Na-Sheng Lin; Wen-Chi Chang (Bioinform., 2018)

Delineation of condition specific Cis- and Trans-acting elements in plant promoters under various Endo- and exogenous stimuli. - Chi-Nga Chow; Yi-Fan Chiang-Hsieh; Chia-Hung Chien; Han-Qin Zheng; Tzong-Yi Lee; Nai-Yun Wu; Kuan-Chieh Tseng; Ping-Fu Hou; Wen-Chi Chang (BMC Genom., 2018)

PlantPAN3.0: a new and updated resource for reconstructing transcriptional regulatory networks from ChIP-seq experiments in plants. - Chi-Nga Chow; Tzong-Yi Lee; Yu-Cheng Hung; Guan-Zhen Li; Kuan-Chieh Tseng; Ya-Hsin Liu; Po-Li Kuo; Han-Qin Zheng; Wen-Chi Chang (Nucleic Acids Res., 2019)

dbPTM in 2019: exploring disease association and cross-talk of post-translational modifications. - Kai-Yao Huang; Tzong-Yi Lee; Hui-Ju Kao; Chen-Tse Ma; Chao-Chun Lee; Tsai-Hsuan Lin; Wen-Chi Chang; Hsien-Da Huang (Nucleic Acids Res., 2019)

SuccSite: Incorporating Amino Acid Composition and Informative k-spaced Amino Acid Pairs to Identify Protein Succinylation Sites. - Hui-Ju Kao; Van-Nui Nguyen; Kai-Yao Huang; Wen-Chi Chang; Tzong-Yi Lee (Genom. Proteom. Bioinform., 2020)

dbPTM in 2022: an updated database for exploring regulatory networks and functional associations of protein post-translational modifications. - Zhongyan Li; Shangfu Li; Mengqi Luo; Jhih-Hua Jhong; Wenshuo Li; Lantian Yao; Yuxuan Pang; Zhuo Wang; Rulan Wang; Renfei Ma; Jinhan Yu; Yuqi Huang; et al. (Nucleic Acids Res., 2022)