Interpretable Prediction of Protein Stability Changes upon Mutation by Using Decision Tree. - Larry Huang; Wen-Lin Huang; Shinn-Ying Ho; Shiow-Fen Hwang (CIBCB, 2005)

Accurate prediction of enzyme subfamily class using an adaptive fuzzy k-nearest neighbor method. - Wen-Lin Huang; Hung-Ming Chen; Shiow-Fen Hwang; Shinn-Ying Ho (Biosyst., 2007)

ProLoc: Prediction of protein subnuclear localization using SVM with automatic selection from physicochemical composition features. - Wen-Lin Huang; Chun-Wei Tung; Hui-Ling Huang; Shiow-Fen Hwang; Shinn-Ying Ho (Biosyst., 2007)

ProLoc-rGO: Using rule-based knowledge with Gene Ontology terms for prediction of protein subnuclear localization. - Wen-Lin Huang; Chun-Wei Tung; Shih-Wen Ho; Shinn-Ying Ho (CIBCB, 2008)

ProLoc-GO: Utilizing informative Gene Ontology terms for sequence-based prediction of protein subcellular localization. - Wen-Lin Huang; Chun-Wei Tung; Shih-Wen Ho; Shiow-Fen Hwang; Shinn-Ying Ho (BMC Bioinform., 2008)

Predicting protein subnuclear localization using GO-amino-acid composition features. - Wen-Lin Huang; Chun-Wei Tung; Hui-Ling Huang; Shinn-Ying Ho (Biosyst., 2009)

Predicting and analyzing DNA-binding domains using a systematic approach to identifying a set of informative physicochemical and biochemical properties. - Hui-Ling Huang; I-Che Lin; Yi-Fan Liou; Chia-Ta Tsai; Kai-Ti Hsu; Wen-Lin Huang; Shinn-Jang Ho; Shinn-Ying Ho (BMC Bioinform., 2011)

Prediction and analysis of protein solubility using a novel scoring card method with dipeptide composition. - Hui-Ling Huang; Phasit Charoenkwan; Te-Fen Kao; Hua-Chin Lee; Fang-Lin Chang; Wen-Lin Huang; Shinn-Jang Ho; Li-Sun Shu; Wen-Liang Chen; Shinn-Ying Ho (BMC Bioinform., 2012)

Evaluation of bile reflux in HIDA images based on fluid mechanics. - Rong-Chin Lo; Wen-Lin Huang; Yu-Ming Fan (Comput. Biol. Medicine, 2015)

Characterizing informative sequence descriptors and predicting binding affinities of heterodimeric protein complexes. - Yerukala Sathipati Srinivasulu; Jyun-Rong Wang; Kai-Ti Hsu; Ming-Ju Tsai; Phasit Charoenkwan; Wen-Lin Huang; Hui-Ling Huang; Shinn-Ying Ho (BMC Bioinform., 2015)

ESA-UbiSite: accurate prediction of human ubiquitination sites by identifying a set of effective negatives. - Jyun-Rong Wang; Wen-Lin Huang; Ming-Ju Tsai; Kai-Ti Hsu; Hui-Ling Huang; Shinn-Ying Ho (Bioinform., 2017)

GREMA: modelling of emulated gene regulatory networks with confidence levels based on evolutionary intelligence to cope with the underdetermined problem. - Ming-Ju Tsai; Jyun-Rong Wang; Shinn-Jang Ho; Li-Sun Shu; Wen-Lin Huang; Shinn-Ying Ho (Bioinform., 2020)