Mining microarray expression data for classifier gene-cores. - Goutham Kurra; Wen Niu; Raj Bhatnagar (BIOKDD, 2001)

Mining high dimensional data for classifier knowledge. - Raj Bhatnagar; Goutham Kurra; Wen Niu (KDD, 2003)

Mining Temporal Databases for Subsequence Patterns. - Wen Niu; Raj Bhatnagar (SDM, 2003)

Data Portal for the Library of Integrated Network-based Cellular Signatures (LINCS) program: integrated access to diverse large-scale cellular perturbation response data. - Amar Koleti; Raymond Terryn; Vasileios Stathias; Caty Chung; Daniel J. Cooper; John Paul Turner; Dusica Vidovic; Michele Forlin; Tanya T. Kelley; Alessandro D'Urso; Bryce K. Allen; Denis Torre; et al. (Nucleic Acids Res., 2018)

Predicting mechanism of action of cellular perturbations with pathway activity signatures. - Yan Ren; Siva Sivaganesan; Nicholas A. Clark; Lixia Zhang; Jacek Biesiada; Wen Niu; David R. Plas; Mario Medvedovic (Bioinform., 2020)

piNET: a versatile web platform for downstream analysis and visualization of proteomics data. - Behrouz Shamsaei; Szymon Chojnacki; Marcin Pilarczyk; Mehdi Fazel-Najafabadi; Wen Niu; Chuming Chen; Karen Ross; Andrea Matlock; Jeremy Muhlich; Somchai Chutipongtanate; Jie Zheng 001; John Turner; et al. (Nucleic Acids Res., 2020)