ETOPE: evolutionary test of predicted exons. - Anton Nekrutenko; Wen-Yu Chung; Wen-Hsiung Li (Nucleic Acids Res., 2003)

Rapid and asymmetric divergence of duplicate genes in the human gene coexpression network. - Wen-Yu Chung; Réka Albert; István Albert; Anton Nekrutenko; Kateryna D. Makova (BMC Bioinform., 2006)

A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes. - Wen-Yu Chung; Samir Wadhawan; Radek Szklarczyk; Sergei L. Kosakovsky Pond; Anton Nekrutenko (PLoS Comput. Biol., 2007)

Updates to the RMAP short-read mapping software. - Andrew D. Smith; Wen-Yu Chung; Emily Hodges; Jude Kendall; Gregory J. Hannon; James Hicks; Zhenyu Xuan; Michael Q. Zhang (Bioinform., 2009)

A Distributed Method for Fast Mining Frequent Patterns From Big Data. - Peng-Yu Huang; Wan-Shu Cheng; Ju-Chin Chen; Wen-Yu Chung; Young-Lin Chen; Kawuu W. Lin (IEEE Access, 2021)

Adaptive Decentralized Federated Gossip Learning for Resource-Constrained IoT Devices. - Lars Wulfert; Navidreza Asadi; Wen-Yu Chung; Christian Wiede; Anton Grabmaier (DistributedML@CoNEXT, 2023)

Multi-Users Extended Reality Remote Collaborative Operation Application based on Digital Twins 3D Projecting. - Ming-Shen Jian; Chun-Ho Cheng; Jay-Hong Cheng; Ming-Hsun Tsai; Wen-Yu Chung; Chi-Hua Chang (ICACT, 2025)

Dynamic Bio-Information Image Recognition of Cancel Cell Death based on Parallel Multiple Artificial Intelligence Modules. - Ming-Shen Jian; Yi-Ling Ye; Wen-Yu Chung; Wen-Xuan Li; Yan-Ting Lin; Bo-Yuan Huang 003; Javeria Sikandar; Yu-Jung Chang (ICACT, 2025)