GateFinder: projection-based gating strategy optimization for flow and mass cytometry. - Nima Aghaeepour; Erin F. Simonds; David J. H. F. Knapp; Robert V. Bruggner; Karen Sachs; Anthony Culos; Pier Federico Gherardini; Nikolay Samusik; Gabriela K. Fragiadakis; Sean Bendall; Brice Gaudilliere; Martin S. Angst; et al. (Bioinform., 2018)

Integration of mechanistic immunological knowledge into a machine learning pipeline improves predictions. - Anthony Culos; Amy Tsai; Natalie Stanley; Martin Becker 003; Mohammad Sajjad Ghaemi; David Mcilwain; Ramin Fallahzadeh; Athena Tanada; Huda Nassar; Camilo Espinosa; Maria Xenochristou; Edward Ganio; et al. (Nat. Mach. Intell., 2020)

CellSeg: a robust, pre-trained nucleus segmentation and pixel quantification software for highly multiplexed fluorescence images. - Michael Y. Lee; Jacob S. Bedia; Salil S. Bhate; Graham L. Barlow; Darci Phillips; Wendy J. Fantl; Garry P. Nolan; Christian M. Schürch (BMC Bioinform., 2022)