Identification of physicochemical selective pressure on protein encoding nucleotide sequences. - Wendy S. W. Wong; Raazesh Sainudiin; Rasmus Nielsen (BMC Bioinform., 2006)

Finding cis-regulatory modules in Drosophila using phylogenetic hidden Markov models. - Wendy S. W. Wong; Rasmus Nielsen (Bioinform., 2007)

Strelka: accurate somatic small-variant calling from sequenced tumor-normal sample pairs. - Christopher T. Saunders; Wendy S. W. Wong; Sajani Swamy; Jennifer Becq; Lisa J. Murray; R. Keira Cheetham (Bioinform., 2012)

Tumor Haplotype Assembly Algorithms for Cancer Genomics. - Derek Aguiar; Wendy S. W. Wong; Sorin Istrail (Pacific Symposium on Biocomputing, 2014)

Mendelian Inconsistent Signatures from 1314 Ancestrally Diverse Family Trios Distinguish Biological Variation from Sequencing Error. - Prachi Kothiyal; Wendy S. W. Wong; Dale L. Bodian; John E. Niederhuber (J. Comput. Biol., 2019)