Major copy proportion analysis of tumor samples using SNP arrays. - Cheng Li 016; Rameen Beroukhim; Barbara A. Weir; Wendy Winckler; Levi A. Garraway; William R. Sellers; Matthew Meyerson (BMC Bioinform., 2008)

A flexible rank-based framework for detecting copy number aberrations from array data. - Thomas LaFramboise; Wendy Winckler; Roman K. Thomas (Bioinform., 2009)

RNA-SeQC: RNA-seq metrics for quality control and process optimization. - David S. DeLuca; Joshua Z. Levin; Andrey Sivachenko; Tim Fennell; Marc-Danie Nazaire; Chris Williams; Michael Reich; Wendy Winckler; Gad Getz (Bioinform., 2012)