ConvNeXt-MHC: improving MHC-peptide affinity prediction by structure-derived degenerate coding and the ConvNeXt model. - Le Zhang 004; Wenkai Song; Tinghao Zhu; Yang Liu 236; Wei Chen 064; Yang Cao (Briefings Bioinform., 2024)

PREDAC-CNN: predicting antigenic clusters of seasonal influenza A viruses with convolutional neural network. - Jing Meng; Jingze Liu; Wenkai Song; Honglei Li; Jiangyuan Wang; Le Zhang 004; Yousong Peng; Aiping Wu; Taijiao Jiang (Briefings Bioinform., 2024)

LiveRetro: Visual Analytics for Strategic Retrospect in Livestream E-Commerce. - Yuchen Wu; Yuansong Xu; Shenghan Gao; Xingbo Wang 001; Wenkai Song; Zhiheng Nie; Xiaomeng Fan; Quan Li (IEEE Trans. Vis. Comput. Graph., 2024)

TransSSVs: a Transformer-based deep learning model for accurate detection of somatic small variants in paired tumor and normal sequencing data. - Jing Meng; Jiangyuan Wang; Jingze Liu; Wenkai Song; Ming Li; Aiping Wu; Taijiao Jiang (Appl. Intell., 2025)