BGI-RIS: an integrated information resource and comparative analysis workbench for rice genomics. - Wenming Zhao; Jing Wang 003; Ximiao He; Xiaobing Huang; Yongzhi Jiao; Mingtao Dai; Shulin Wei; Jian Fu; Ye Chen; Xiaoyu Ren; Yong Zhang 036; Peixiang Ni; et al. (Nucleic Acids Res., 2004)

wapRNA: a web-based application for the processing of RNA sequences. - Wenming Zhao; Wanfei Liu; Dongmei Tian; Bixia Tang; Yanqing Wang; Caixia Yu; Rujiao Li; Yunchao Ling; Jiayan Wu; Shuhui Song; Songnian Hu (Bioinform., 2011)

Web Resources for Model Organism Studies. - Bixia Tang; Yanqing Wang; Junwei Zhu; Wenming Zhao (Genom. Proteom. Bioinform., 2015)

Delta: a new web-based 3D genome visualization and analysis platform. - Bixia Tang; Feifei Li 009; Jing Li; Wenming Zhao; Zhihua Zhang 007 (Bioinform., 2018)

一种改进的三维Otsu图像分割算法 (Improved Three-dimensional Otsu Image Segmentation Algorithm). - Guoqing Qiu; Gengyun Xiong; Wenming Zhao (计算机科学, 2018)

MethBank 3.0: a database of DNA methylomes across a variety of species. - Rujiao Li; Fang Liang; Mengwei Li; Dong Zou; Shixiang Sun; Yongbing Zhao; Wenming Zhao; Yiming Bao; Jing-Fa Xiao; Zhang Zhang 002 (Nucleic Acids Res., 2018)

ICG: a wiki-driven knowledgebase of internal control genes for RT-qPCR normalization. - Jian Sang; Zhennan Wang; Man Li; Jiabao Cao; Guangyi Niu; Lin Xia; Dong Zou; Fan Wang; Xingjian Xu; Xiaojiao Han; Jinqi Fan; Ye Yang; et al. (Nucleic Acids Res., 2018)

Genome Variation Map: a data repository of genome variations in BIG Data Center. - Shuhui Song; Dongmei Tian; Cuiping Li 004; Bixia Tang; Lili Dong; Jing-Fa Xiao; Yiming Bao; Wenming Zhao; Hang He; Zhang Zhang 002 (Nucleic Acids Res., 2018)

iDog: an integrated resource for domestic dogs and wild canids. - Bixia Tang; Qing Zhou; Lili Dong; Wulue Li; Xiangquan Zhang; Li Lan; Shuang Zhai; Jing-Fa Xiao; Zhang Zhang 002; Yiming Bao; Ya-Ping Zhang; Guo-Dong Wang; et al. (Nucleic Acids Res., 2019)

NucMap: a database of genome-wide nucleosome positioning map across species. - Yongbing Zhao; Jinyue Wang; Fang Liang; Yanxia Liu; Qi Wang 072; Hao Zhang; Meiye Jiang; Zhewen Zhang; Wenming Zhao; Yiming Bao; Zhang Zhang 002; Jiayan Wu; et al. (Nucleic Acids Res., 2019)

The Elements of Data Sharing. - Zhang Zhang 002; Shuhui Song; Jun Yu 004; Wenming Zhao; Jing-Fa Xiao; Yiming Bao (Genom. Proteom. Bioinform., 2020)

Population Genetics of SARS-CoV-2: Disentangling Effects of Sampling Bias and Infection Clusters. - Qi Liu 048; Shilei Zhao; Chengmin Shi; Shuhui Song; Sihui Zhu; Yankai Su; Wenming Zhao; Mingkun Li; Yiming Bao; Yongbiao Xue; Hua Chen 010 (Genom. Proteom. Bioinform., 2020)

The Global Landscape of SARS-CoV-2 Genomes, Variants, and Haplotypes in 2019nCoVR. - Shuhui Song; Lina Ma; Dong Zou; Dongmei Tian; Cuiping Li 004; Junwei Zhu; Meili Chen; Anke Wang; Yingke Ma; Mengwei Li; Xufei Teng; Ying Cui; et al. (Genom. Proteom. Bioinform., 2020)

The Genome Sequence Archive Family: Toward Explosive Data Growth and Diverse Data Types. - Tingting Chen; Xu Chen 037; Sisi Zhang; Junwei Zhu; Bixia Tang; Anke Wang; Lili Dong; Zhewen Zhang; Caixia Yu; Yanling Sun; Lianjiang Chi; Huanxin Chen; et al. (Genom. Proteom. Bioinform., 2021)

Genome Warehouse: A Public Repository Housing Genome-scale Data. - Meili Chen; Yingke Ma; Song Wu; Xinchang Zheng; Hongen Kang; Jian Sang; Xingjian Xu; Lili Hao; Zhaohua Li; Zheng Gong; Jing-Fa Xiao; Zhang Zhang 002; et al. (Genom. Proteom. Bioinform., 2021)

Genome Variation Map: a worldwide collection of genome variations across multiple species. - Cuiping Li 004; Dongmei Tian; Bixia Tang; Xiaonan Liu; Xufei Teng; Wenming Zhao; Zhang Zhang 002; Shuhui Song (Nucleic Acids Res., 2021)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2021. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Shuhui Song; Lina Ma; et al. (Nucleic Acids Res., 2021)

Coronavirus GenBrowser for monitoring the transmission and evolution of SARS-CoV-2. - Dalang Yu; Xiao Yang; Bixia Tang; Yi-Hsuan Pan; Jianing Yang; Guangya Duan; Junwei Zhu; Zi-Qian Hao; Hailong Mu; Long Dai; Wangjie Hu; Mochen Zhang; et al. (Briefings Bioinform., 2022)

Database Resources of the National Genomics Data Center, China National Center for Bioinformation in 2022. - Yongbiao Xue; Yiming Bao; Zhang Zhang 002; Wenming Zhao; Jing-Fa Xiao; Shunmin He; Guoqing Zhang 006; Yixue Li; Guoping Zhao; Runsheng Chen; Jingyao Zeng; Yadong Zhang; et al. (Nucleic Acids Res., 2022)

Gene Expression Nebulas (GEN): a comprehensive data portal integrating transcriptomic profiles across multiple species at both bulk and single-cell levels. - Yuansheng Zhang; Dong Zou; Tongtong Zhu; Tianyi Xu; Ming Chen; Guangyi Niu; Wenting Zong; Rong Pan; Wei Jing; Jian Sang; Chang Liu 082; Yujia Xiong; et al. (Nucleic Acids Res., 2022)

Ongoing Positive Selection Drives the Evolution of SARS-CoV-2 Genomes. - Yali Hou; Shilei Zhao; Qi Liu 048; Xiaolong Zhang; Tong Sha; Yankai Su; Wenming Zhao; Yiming Bao; Yongbiao Xue; Hua Chen 010 (Genom. Proteom. Bioinform., 2022)

OBIA: An Open Biomedical Imaging Archive. - Enhui Jin; Dongli Zhao; Gangao Wu; Junwei Zhu; Zhonghuang Wang; Zhiyao Wei; Sisi Zhang; Anke Wang; Bixia Tang; Xu Chen 037; Yanling Sun; Zhe Zhang; et al. (Genom. Proteom. Bioinform., 2023)

Database Commons: A Catalog of Worldwide Biological Databases. - Lina Ma; Dong Zou; Lin Liu; Huma Shireen; Amir Ali Abbasi; Alex Bateman; Jing-Fa Xiao; Wenming Zhao; Yiming Bao; Zhang Zhang 002 (Genom. Proteom. Bioinform., 2023)

HGD: an integrated homologous gene database across multiple species. - Guangya Duan; Gangao Wu; Xiaoning Chen; Dongmei Tian; Zhaohua Li; Yanling Sun; Zhenglin Du; Lili Hao; Shuhui Song; Yuan Gao; Jing-Fa Xiao; Zhang Zhang 002; et al. (Nucleic Acids Res., 2023)

McAN: a novel computational algorithm and platform for constructing and visualizing haplotype networks. - Lun Li; Bo Xu; Dongmei Tian; Anke Wang; Junwei Zhu; Cuiping Li 004; Na Li; Wei Zhao 040; Leisheng Shi; Yongbiao Xue; Zhang Zhang 002; Yiming Bao; et al. (Briefings Bioinform., 2023)

GenBase: A Nucleotide Sequence Database. - Congfan Bu; Xinchang Zheng; Xuetong Zhao; Tianyi Xu; Xue Bai; Yaokai Jia; Meili Chen; Lili Hao; Jing-Fa Xiao; Zhang Zhang 002; Wenming Zhao; Bixia Tang; et al. (Genom. Proteom. Bioinform., 2024)

Characterizing the role of the microbiota-gut-brain axis in cerebral small vessel disease: An integrative multi‑omics study. - Yu Song; Xia Zhou; Han Zhao; Wenming Zhao; Zhongwu Sun; Jiajia Zhu; Yongqiang Yu (NeuroImage, 2024)

The Updated Genome Warehouse: Enhancing Data Value, Security, and Usability to Address Data Expansion. - Yingke Ma; Xuetong Zhao; Yaokai Jia; Zhenxian Han; Caixia Yu; Zhuojing Fan; Zhang Zhang 002; Jingfa Xiao; Wenming Zhao; Yiming Bao; Meili Chen (Genom. Proteom. Bioinform., 2025)