Finding and Analyzing the Minimum Set of Driver Nodes in control of Boolean Networks. - Wenpin Hou; Takeyuki Tamura; Wai-Ki Ching; Tatsuya Akutsu (Adv. Complex Syst., 2016)

A systematic framework to derive N-glycan biosynthesis process and the automated construction of glycosylation networks. - Wenpin Hou; Yushan Qiu; Nobuyuki Hashimoto; Wai-Ki Ching; Kiyoko F. Aoki-Kinoshita (BMC Bioinform., 2016)

Hadamard Kernel SVM with applications for breast cancer outcome predictions. - Hao Jiang 009; Wai-Ki Ching; Wai-Shun Cheung; Wenpin Hou; Hong Yin (BMC Syst. Biol., 2017)

Mathematical modelling and optimization in biological networks and data. - Wenpin Hou (2017)

Drug Side-Effect Profiles Prediction: From Empirical to Structural Risk Minimization. - Hao Jiang 009; Yushan Qiu; Wenpin Hou; Xiaoqing Cheng; Man Yi Yim; Wai-Ki Ching (IEEE ACM Trans. Comput. Biol. Bioinform., 2020)

Palo: spatially aware color palette optimization for single-cell and spatial data. - Wenpin Hou; Zhicheng Ji (Bioinform., 2022)

A systematic evaluation of large language models for generating programming code. - Wenpin Hou; Zhicheng Ji (CoRR, 2024)