Nonlocal Mumford-Shah Model for Multiphase Texture Image Segmentation. - Wenqi Lu 001; Jinming Duan 001; Weibo Wei; Zhenkuan Pan 001; Guodong Wang 001 (IGTA, 2015)

Second Order Variational Model for Image Decomposition Using Split Bregman Algorithm. - Jinming Duan 001; Wenqi Lu 001; Guodong Wang 001; Zhenkuan Pan 001; Li Bai 001 (IScIDE (1), 2015)

Some Nonlocal Variational Models Along with Their Fast Algorithms. - Shixiu Zheng; Zhenkuan Pan 001; Jinming Duan 001; Wenqi Lu 001; Cunliang Liu (IEEE WISA, 2016)

Denoising optical coherence tomography using second order total generalized variation decomposition. - Jinming Duan 001; Wenqi Lu 001; Christopher R. Tench; Irene Gottlob; Frank Proudlock; Niraj Nilesh Samani; Li Bai 001 (Biomed. Signal Process. Control., 2016)

An edge-weighted second order variational model for image decomposition. - Jinming Duan 001; Zhaowen Qiu; Wenqi Lu 001; Guodong Wang 001; Zhenkuan Pan 001; Li Bai 001 (Digit. Signal Process., 2016)

Graph- and finite element-based total variation models for the inverse problem in diffuse optical tomography. - Wenqi Lu 001; Jinming Duan 001; David Orive-Miguel; Lionel Hervé; Iain B. Styles (CoRR, 2019)

A new nonlocal forward model for diffuse optical tomography. - Wenqi Lu 001; Jinming Duan 001; Joshua Deepak Veesa; Iain B. Styles (CoRR, 2019)

Capturing Cellular Topology in Multi-Gigapixel Pathology Images. - Wenqi Lu 001; Simon Graham; Mohsin Bilal; Nasir M. Rajpoot; Fayyaz A. Minhas (CVPR Workshops, 2020)

Advanced regularization and discretization methods in diffuse optical tomography. - Wenqi Lu 001 (2020)

Semantic annotation for computational pathology: Multidisciplinary experience and best practice recommendations. - Noor ul Wahab; Islam M. Miligy; Katherine Dodd; Harvir Sahota; Michael Toss; Wenqi Lu 001; Mostafa Jahanifar; Mohsin Bilal; Simon Graham; Young Park; Giorgos Hadjigeorghiou; Abhir Bhalerao; et al. (CoRR, 2021)

SlideGraph+: Whole Slide Image Level Graphs to Predict HER2Status in Breast Cancer. - Wenqi Lu 001; Michael Toss; Emad Rakha; Nasir M. Rajpoot; Fayyaz A. Minhas (CoRR, 2021)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2021)

Automatic Segmentation of Target Structures for Total Marrow and Lymphoid Irradiation in Bone Marrow Transplantation. - Jun Shi 007; Zhaohui Wang 002; Hongyu Kan; Minfan Zhao; Xudong Xue; Bing Yan; Hong An; Jianjun Shen; Joseph Bartlett; Wenqi Lu 001; Jinming Duan 001 (EMBC, 2022)

Whole Slide Image Multi-Classification of Cervical Epithelial Lesions Based on Unsupervised Pre-training. - Minfan Zhao; Min Ling; Zhaohui Wang 002; Jun Shi 007; Hongyu Kan; Hong An; Wenting Han; Joseph Bartlett; Wenqi Lu 001 (EMBC, 2022)

U-Net vs Transformer: Is U-Net Outdated in Medical Image Registration? - Xi Jia; Joseph Bartlett; Tianyang Zhang 003; Wenqi Lu 001; Zhaowen Qiu; Jinming Duan 001 (MLMI@MICCAI, 2022)

SlideGraph+: Whole slide image level graphs to predict HER2 status in breast cancer. - Wenqi Lu 001; Michael Toss; Muhammad Dawood; Emad Rakha; Nasir M. Rajpoot; Fayyaz A. Minhas (Medical Image Anal., 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox: An End-to-End Toolbox for Advanced Tissue Image Analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2022)

Fourier-Net: Fast Image Registration with Band-Limited Deformation. - Xi Jia; Joseph Bartlett; Wei Chen 092; Siyang Song; Tianyang Zhang 003; Xinxing Cheng; Wenqi Lu 001; Zhaowen Qiu; Jinming Duan 001 (AAAI, 2023)

Fourier-Net+: Leveraging Band-Limited Representation for Efficient 3D Medical Image Registration. - Xi Jia; Alexander Thorley; Alberto Gómez 002; Wenqi Lu 001; Dipak Kotecha; Jinming Duan 001 (CoRR, 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

Arbitrary Order Total Variation for Deformable Image Registration. - Jinming Duan 001; Xi Jia; Joseph Bartlett; Wenqi Lu 001; Zhaowen Qiu (Pattern Recognit., 2023)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - John Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2023)

Optimizing ADMM and Over-Relaxed ADMM Parameters for Linear Quadratic Problems. - Jintao Song; Wenqi Lu 001; Yunwen Lei; Yuchao Tang; Zhenkuan Pan 001; Jinming Duan 001 (AAAI, 2024)

WiNet: Wavelet-Based Incremental Learning for Efficient Medical Image Registration. - Xinxing Cheng; Xi Jia; Wenqi Lu 001; Qiufu Li; Linlin Shen; Alexander Krull; Jinming Duan 001 (MICCAI (2), 2024)

Development of Automated Neural Network Prediction for Echocardiographic Left ventricular Ejection Fraction. - Yuting Zhang; Boyang Liu; Karina V. Bunting; David Brind; Alexander Thorley; Andreas Karwath; Wenqi Lu 001; Diwei Zhou; Xiaoxia Wang; Alastair R. Mobley; Otilia Tica; Georgios V. Gkoutos; et al. (CoRR, 2024)

TIAToolbox as an end-to-end library for advanced tissue image analytics. - Johnathan Pocock; Simon Graham; Quoc Dang Vu; Mostafa Jahanifar; Srijay Deshpande; Giorgos Hadjigeorghiou; Adam Shephard; Raja Muhammad Saad Bashir; Mohsin Bilal; Wenqi Lu 001; David B. A. Epstein; Fayyaz Minhas; et al. (Zenodo, 2024)

Skin Lesion Classification Using Dermoscopic Images and Clinical Metadata: Insights from Multimodal Models. - Sakib Ahammed; Xia Cui; Wenqi Lu 001; Moi Hoon Yap (CVPR Workshops, 2025)

SACB-Net: Spatial-awareness Convolutions for Medical Image Registration. - Xinxing Cheng; Tianyang Zhang 003; Wenqi Lu 001; Qingjie Meng; Alejandro F. Frangi; Jinming Duan 001 (CVPR, 2025)

Domain Adaptation for Skin Lesion: Evaluating Real-World Generalisation. - Nurjahan Sultana; Wenqi Lu 001; Xinqi Fan; Moi Hoon Yap (CVPR Workshops, 2025)

Selective Alignment Transfer for Domain Adaptation in Skin Lesion Analysis. - Nurjahan Sultana; Wenqi Lu 001; Xinqi Fan; Moi Hoon Yap (MICCAI (6), 2025)

An Efficient Model-Driven Groupwise Approach for Atlas Construction. - Ziwei Zou; Beiji Zou 001; Xiaoyan Kui; Wenqi Lu 001; Haoran Dou; Arezoo Zakeri; Timothy Cootes; Alejandro F. Frangi; Jinming Duan 001 (CoRR, 2025)

A Language-Signal-Vision Multimodal Framework for Multitask Cardiac Analysis. - Yuting Zhang; Tiantian Geng; Luoying Hao; Xinxing Cheng; Alexander Thorley; Xiaoxia Wang; Wenqi Lu 001; Sandeep S. Hothi; Lei Wei; Zhaowen Qiu; Dipak Kotecha; Jinming Duan 001 (CoRR, 2025)

CardAIc-Agents: A Multimodal Framework with Hierarchical Adaptation for Cardiac Care Support. - Yuting Zhang; Karina V. Bunting; Asgher Champsi; Xiaoxia Wang; Wenqi Lu 001; Alexander Thorley; Sandeep S. Hothi; Zhaowen Qiu; Dipak Kotecha; Jinming Duan 001 (CoRR, 2025)

Decoder-Only Image Registration. - Xi Jia; Wenqi Lu 001; Xinxing Cheng; Jinming Duan 001 (IEEE Trans. Medical Imaging, 2025)

Robust tumor segmentation in incomplete multi-modal imaging via a synergy of diffusion and Mamba models. - Ziwei Zou; Xiaoyan Kui; Wenqi Lu 001; Yang Li 111; Zhipeng Hu; Jinming Duan 001; Beiji Zou 001 (Biomed. Signal Process. Control., 2026)