G3viz: an R package to interactively visualize genetic mutation data using a lollipop-diagram. - Xin Guo 020; Bo Zhang 077; Wenqi Zeng; Shuting Zhao; Dongliang Ge (Bioinform., 2020)

A Note on Learning Rare Events in Molecular Dynamics using LSTM and Transformer. - Wenqi Zeng; Siqin Cao; Xuhui Huang; Yuan Yao 011 (CoRR, 2021)

Groot: Graph-Centric Row Reordering with Tree for Sparse Matrix Multiplications on Tensor Cores. - YuAng Chen; Jiadong Xie 002; Siyi Teng; Wenqi Zeng; Jeffrey Xu Yu (EuroSys, 2025)

Enhanced Sampling, Public Dataset and Generative Model for Drug-Protein Dissociation Dynamics. - Maodong Li; Jiying Zhang; Bin Feng; Wenqi Zeng; Dechin Chen; Zhijun Pan; Yu Li; Zijing Liu; Yi Isaac Yang (CoRR, 2025)

MM-Skin: Enhancing Dermatology Vision-Language Model with an Image-Text Dataset Derived from Textbooks. - Wenqi Zeng; Yuqi Sun; Chenxi Ma; Weimin Tan; Bo Yan (CoRR, 2025)

Automated Model-Free Sorting of Single-Molecule Fluorescence Events Using a Deep Learning Based Hidden-State Model. - Wenqi Zeng; Shuqi Zhou; Yuan Yao; Chunlai Chen (CoRR, 2025)